POC Conf. Call 10-15-13 - Revision history

Cooperl: /* vascular leaf post-expansion stage (PO:0001053): */

2013-10-25T20:53:16Z

vascular leaf post-expansion stage (PO:0001053):

Cooperl: /* vascular leaf post-expansion stage (PO:0001053): */

2013-10-25T20:49:41Z

vascular leaf post-expansion stage (PO:0001053):

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T19:08:07Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T18:47:03Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T18:03:54Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T18:00:32Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T17:55:52Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T17:54:47Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T01:02:27Z

root apical meristem PO:0020147 and child terms

Cooperl: /* root apical meristem PO:0020147 and child terms */

2013-10-25T00:55:56Z

root apical meristem PO:0020147 and child terms

← Older revision		Revision as of 20:53, 25 October 2013
Line 81:		Line 81:

	from 9-10-13: ''Perhaps change term to "vascular leaf mature stage", or maybe keep the "leaf fully expanded stage"???. Examples of leaves with indeterminate growth, ferns, viney leaves, some Mahogany plants, but they are the exceptions. Could add as a comment (get names from DWS). ''		from 9-10-13: ''Perhaps change term to "vascular leaf mature stage", or maybe keep the "leaf fully expanded stage"???. Examples of leaves with indeterminate growth, ferns, viney leaves, some Mahogany plants, but they are the exceptions. Could add as a comment (get names from DWS). ''
		+
		+	''The 'mature' vascular leaf (fully expanded and differentiated) can exist from a few weeks to a number of years, before starting to senescence.''

	==vascular leaf senescence stage (PO:0001054)==		==vascular leaf senescence stage (PO:0001054)==

@@ Line 76: / Line 76: @@
 ==[https://sourceforge.net/p/obo/plant-ontology-po-term-requests/558/ vascular leaf post-expansion stage (PO:0001053)]:==
-old name and def'n: 3 leaf fully expanded stage (PO:0001053): Stage of leaf development when leaf is fully expanded.
+old name and def'n: '''3 leaf fully expanded stage (PO:0001053)''': Stage of leaf development when leaf is fully expanded.
 Proposed new Name and def'n: vascular leaf post-expansion stage: A vascular leaf development stage (PO:0025570) that begins when the vascular leaf (PO:0009025) is fully expanded and ends with the onset of the vascular leaf senescence stage (PO:0001054).

← Older revision		Revision as of 19:08, 25 October 2013
Line 129:		Line 129:

	''Revised def'n: A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.		''Revised def'n: A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.
−
−	~~Also_ could post comment on tracker: https://sourceforge.net/p/obo/plant-ontology-po-term-requests/163/~~
−
−	~~Issue is how to define the meristem that gives rise to an adventitious root?~~
−
−	~~Background; existing definitions:~~
−
−	~~shoot-borne root (PO:0000042): A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.~~
−	~~broad synonym: adventitious root (not problem with existing definition of root, below)~~
−
−	~~adventitious root apical meristem (PO:0006021): A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042).~~
−
−	~~But the problem is that this cannot actually be a root meristem, as it arises from the shoot axis and is not part of the root system- based on this def'n.~~
−
−	~~root meristem (PO:0006085): A portion of meristem tissue (PO:0009013) that is part of a root system (PO:0025025).~~
−
−	~~Unless we redefine the root meristem (PO:0006085): A portion of meristem tissue (PO:0009013) that gives rise to a root (PO:0009005).~~
−
−	~~But then we have to revise root: A plant axis (PO:0025004) that is part of a root system (PO:0025025). (since shoot-borne roots are also roots)~~
−
−	~~root (PO:0009005):~~
−
−
−	~~root system (PO:0025025) A collective plant organ structure (PO:0025007) that produces root apical meristems (PO:0020147) and the plant structures that arise from them.~~

	=Upcoming meetings and Presentations 2013-2014:=		=Upcoming meetings and Presentations 2013-2014:=

← Older revision		Revision as of 18:47, 25 October 2013
Line 129:		Line 129:

	''Revised def'n: A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.		''Revised def'n: A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.
		+
		+	Also_ could post comment on tracker: https://sourceforge.net/p/obo/plant-ontology-po-term-requests/163/
		+
		+	Issue is how to define the meristem that gives rise to an adventitious root?
		+
		+	Background; existing definitions:
		+
		+	shoot-borne root (PO:0000042): A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.
		+	broad synonym: adventitious root (not problem with existing definition of root, below)
		+
		+	adventitious root apical meristem (PO:0006021): A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042).
		+
		+	But the problem is that this cannot actually be a root meristem, as it arises from the shoot axis and is not part of the root system- based on this def'n.
		+
		+	root meristem (PO:0006085): A portion of meristem tissue (PO:0009013) that is part of a root system (PO:0025025).
		+
		+	Unless we redefine the root meristem (PO:0006085): A portion of meristem tissue (PO:0009013) that gives rise to a root (PO:0009005).
		+
		+	But then we have to revise root: A plant axis (PO:0025004) that is part of a root system (PO:0025025). (since shoot-borne roots are also roots)
		+
		+	root (PO:0009005):
		+
		+
		+	root system (PO:0025025) A collective plant organ structure (PO:0025007) that produces root apical meristems (PO:0020147) and the plant structures that arise from them.

	=Upcoming meetings and Presentations 2013-2014:=		=Upcoming meetings and Presentations 2013-2014:=

@@ Line 125: / Line 125: @@
 part of relation to shoot-borne root (PO:0000042)''
-* shoot-borne root (PO:0000042): A post-embryonic root that develops from shoot tissue.
+* '''shoot-borne root (PO:0000042)''': A post-embryonic root that develops from shoot tissue.
 broad synonym: adventitious root

@@ Line 118: / Line 118: @@
 ''Should be: A root apical meristem (PO:0020147) gives rise to a lateral root (PO:0020121).''
-** '''[https://sourceforge.net/p/obo/plant-ontology-po-term-requests/163/ adventitious root apical meristem (PO:0006021)]:''' A root apical meristem (PO:0020147) that is part of an adventitious root.
+* '''[https://sourceforge.net/p/obo/plant-ontology-po-term-requests/163/ adventitious root apical meristem (PO:0006021)]:''' A root apical meristem (PO:0020147) that is part of an adventitious root.
 ''Proposed def'n: A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042).''  Problem is that this is not actually a root meristem as it arises from the shoot axis and is not part of the root system.
@@ Line 125: / Line 125: @@
 part of relation to shoot-borne root (PO:0000042)''
-shoot-borne root (PO:0000042): A post-embryonic root that develops from shoot tissue.
+* shoot-borne root (PO:0000042): A post-embryonic root that develops from shoot tissue.
-broad synonym: adventitious root
+''Revised def'n: A root (PO:0009005) that develops from shoot axis (PO:0025029) tissue, in the post-embryonic stage.
 =Upcoming meetings and Presentations 2013-2014:=

@@ Line 120: / Line 120: @@
 ** '''[https://sourceforge.net/p/obo/plant-ontology-po-term-requests/163/ adventitious root apical meristem (PO:0006021)]:''' A root apical meristem (PO:0020147) that is part of an adventitious root.
-Proposed def'n: A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042).  Problem is that this is not actually a root meristem as it arises from the shoot.
+''Proposed def'n: A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042).''  Problem is that this is not actually a root meristem as it arises from the shoot axis and is not part of the root system.
-''Revised def'n:  A root apical meristem (PO:0020147) gives rise to a shoot-borne root (PO:0000042). Added missing SF xref: OBO_SF2_PO: 163
+''Revised def'n:  A   gives rise to a shoot-borne root (PO:0000042). Added missing SF xref: OBO_SF2_PO: 163
 part of relation to shoot-borne root (PO:0000042)''

@@ Line 114: / Line 114: @@
 ''Should be: A root apical meristem (PO:0020147) gives rise to a primary root (PO:0020127).''
+* '''[https://sourceforge.net/p/obo/plant-ontology-po-term-requests/577/ lateral root apical meristem (PO:0006020)]:''' A root apical meristem (PO:0020147) is part of a lateral root (PO:0020121).
 ''Should be: A root apical meristem (PO:0020147) gives rise to a lateral root (PO:0020121).''