POC Conf. Call 1-10-12 - Revision history

Cooperl: /* ...anlagen */

2012-01-29T18:01:15Z

...anlagen

Cooperl: /* plate meristem */

2012-01-29T18:00:40Z

plate meristem

Cooperl: /* marginal meristem */

2012-01-29T02:59:05Z

marginal meristem

Cooperl: /* adaxial meristem */

2012-01-27T04:12:52Z

adaxial meristem

Rwalls: /* Portions of plant substance: */

2012-01-26T22:12:08Z

Portions of plant substance:

Cooperl: /* Portions of plant substance: */

2012-01-24T03:11:06Z

Portions of plant substance:

Cooperl: /* Portions of plant substance: */

2012-01-24T03:04:08Z

Portions of plant substance:

Cooperl: /* Portions of plant substance: */

2012-01-24T02:58:42Z

Portions of plant substance:

Cooperl: /* Portions of plant substance: */

2012-01-24T02:51:25Z

Portions of plant substance:

Cooperl: /* Portions of plant substance: */

2012-01-24T02:50:00Z

Portions of plant substance:

@@ Line 245: / Line 245: @@
 ===...anlagen===
-Agrinomics has requested several new anlagen terms. We have the existing term:
+Agron-Omics has requested several new anlagen terms. We have the existing term:
 '''carpel anlagen (PO:0006005):''' A portion of meristem tissue that is a presumptive region on a floral meristem where carpel primordia would initiate.
@@ Line 264: / Line 264: @@
 ====[https://sourceforge.net/tracker/?func=detail&aid=3459280&group_id=76834&atid=835555 cotyledon anlagen]====
-From Agrinomics:  A portion of meristem tissue that is a presumptive region on the embryo meristem where cotyledon primordia would initiate.
+From Agron-Omics:  A portion of meristem tissue that is a presumptive region on the embryo meristem where cotyledon primordia would initiate.
 '''Proposed definition:''' A phyllome anlagen that will give rise to a cotyldon primordium and is part of a plant embryo.
@@ Line 275: / Line 275: @@
 ====[https://sourceforge.net/tracker/?func=detail&aid=3459279&group_id=76834&atid=835555 leaf anlagen]====
-From Agricnomics:  A portion of meristem tissue that is a presumptive region on a vegetative meristem where leaf primordia would initiate.
+From Agron-Omics:  A portion of meristem tissue that is a presumptive region on a vegetative meristem where leaf primordia would initiate.
 '''Proposed definition:''' A phyllome anlagen that will give rise to a leaf primordium and is part of a peripheral zone of a vegetative shoot apical meristem.

@@ Line 224: / Line 224: @@
 ===[https://sourceforge.net/tracker/?func=detail&aid=3459331&group_id=76834&atid=835555 plate meristem]===
-From Agrinomics: Meristem established inside the leaf primordia. The plate meristem is a meristematic tissue consisting of parallel layers of cells dividing anticlinally (perpendicular to leaf surface) and contributes to the major part of leaf growth.
+From Agron-Omics: Meristem established inside the leaf primordia. The plate meristem is a meristematic tissue consisting of parallel layers of cells dividing anticlinally (perpendicular to leaf surface) and contributes to the major part of leaf growth.
 From Evert (Esau's Plant Anatomy): A meristematic tissue consisting of parallel layers of cells dividing only anticlinally with reference to the wide surface of the tissue. Characteristic of ground meristem of plant parts that assume a flat form as a leaf.

@@ Line 199: / Line 199: @@
 ===[https://sourceforge.net/tracker/?func=detail&aid=3459318&group_id=76834&atid=835555 marginal meristem]===
-From Agrinomics: A region of meristematic tissue located along the edges of a leaf primordium. Repeated divisions of initials in this area give rise to the mesophyll and epidermal tissues of the blade.
+From Agron-Omics: A region of meristematic tissue located along the edges of a leaf primordium. Repeated divisions of initials in this area give rise to the mesophyll and epidermal tissues of the blade.
 From Fahn: The meristem along the edge of a developing leaf.

@@ Line 173: / Line 173: @@
 From Fahn: A meristematic tissue on the adaxial side of a leaf primordium that contributes to the thickness of the petiole and midrib (also called ventral meristem).
-There are two types of adaxial meristems: One that occurs early in leaf development, and contributes to the thickness of the entire leaf, as in unifacial leaves, and one that occurs later in development and contributes to the thickness of the petiole and midrib. The later is a 'Rundingsmeristem' in German, or an abaxial rounding meristem.
+There are two types of adaxial meristems: One that occurs early in leaf development, and contributes to the thickness of the entire leaf, as in unifacial leaves, and one that occurs later in development and contributes to the thickness of the petiole and midrib. The later is a 'Rundingsmeristem' in German, or an 'adaxial rounding meristem'.
 Propose revised def'n, new term: '''leaf adaxial meristem (PO:000xxxx)''': A portion of meristem tissue that is found on the adaxial side of a young leaf.
@@ Line 190: / Line 190: @@
 leaf adaxial unifacial meristem - the second type described above, as found in Acacia
-''Better to just keep them in the comment for adaxial meristem at this point. Concerned that people will end up using the wrong type, and the separate terms are not widely used. Also, most of our annotations will be on the first type. Can add both as synonyms to adaxial meristem.''
+''We decided that it would be better to just keep them in the comment for adaxial meristem at this point. Concerned that people will end up using the wrong type, and the separate terms are not widely used. Also, most of our annotations will be on the first type. Can add both as synonyms to adaxial meristem.  Put in reference for the leaf adaxial rounding meristem from DWS''
 Should we also add a term for '''leaf abaxial meristem'''? ''Yes''
 ''Should have generic phyllome abaxial/adaxial/plate meristem, with specific subtypes for leaves, etc., only add for leaves at this point. This should be part_of vascular leaf, not leaf.''
 ===[https://sourceforge.net/tracker/?func=detail&aid=3459318&group_id=76834&atid=835555 marginal meristem]===

← Older revision		Revision as of 22:12, 26 January 2012
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−	Image from ~~[http~~://an5qy7ag4q.search.serialssolutions.com/?&url_ver=Z39.88-2004&url_ctx_fmt=info:ofi/fmt:kev:mtx:ctx&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.artnum=PII%20S0163-7827%2802%2900045-0&rft.atitle=Biosynthesis%20and%20secretion%20of%20plant%20cuticular%20wax&rft.aufirst=L&rft.aulast=Kunst&rft.date=2003&rft.epage=80&rft.genre=article&rft.issn=0163-7827&rft.issue=1&rft.jtitle=PROGRESS%20IN%20LIPID%20RESEARCH&rft.pages=51-80&rft.spage=51&rft.stitle=PROG%20LIPID%20RES&rft.volume=42&rfr_id=info:sid/www.isinet.com:WoK:WOS&rft.au=Samuels%2C%20AL&rft_id=info:doi/10.1016%2FS0163-7827%2802%2900045-0 Kunst and Samuels]: '''Need to replace this link- goes to Stonybrook''' ''	+	Image from: PMID:12467640: Kunst, L. & Samuels, A.L. Biosynthesis and secretion of plant cuticular wax. Prog. Lipid Res. 42, 51-80 (2003).
−
−	~~PMID: 18251711: Samuels, L., Kunst, L. & Jetter, R. Sealing plant surfaces: cuticular wax formation by epidermal cells. Annu Rev Plant Biol 59, 683-707 (2008).~~
−
−	PMID:12467640: Kunst, L. & Samuels, A.L. Biosynthesis and secretion of plant cuticular wax. Prog. Lipid Res. 42, 51-80 (2003).

@@ Line 115: / Line 115: @@
 ''We should name this plant cuticle to avoid conflicts with cuticles in animals, which are different, and prefix other terms. Not needed for cutin, since it only occurs in plants (animals have chitin).''
-''Reword this to say "..polyester matrix of hydroxy- and hydroxy epoxy C16 and C18 fatty acids chains (cutin)..."''
+''Reword this to say "..polyester matrix of hydroxy- and hydroxy epoxy C16 and C18 fatty acid chains (cutin)..."''
 ''Should start adding PO ids to comments whenever we refer to them. This will create automatic hyperlink and serve as a check that we actually have the terms in the PO.''
@@ Line 160: / Line 160: @@
 '''proposed  new term: intercuticular wax (PO:0025389):''' A portion of cuticular wax that is an amorphous mixture of lipids embedded in the cutin of a cuticle proper.
-part_of cuticle proper, adjacent_to cell wall
+part_of cuticle proper, adjacent_to cell wall (but cell wall is not a PO term)
 ref: PMID:12467640, PO_REF:00010

@@ Line 131: / Line 131: @@
 '''proposed new term: cutin (PO:0025385):''' A portion of plant substance that is composed of a polyester matrix of hydroxy- and hydroxy epoxy fatty acids C16 and C18 long  (''Need to check on other components; may want to work on wording a little'')
-Comment: Cutin is the insoluble, covalently cross-linked polymer that forms an electron dense layer over the epidermal cells of an areal plant structure.
+Comment: Cutin is the insoluble, covalently cross-linked polymer that forms an electron dense layer over the epidermal cells of an aerial plant structure.
 ref: PMID:12467640

@@ Line 126: / Line 126: @@
 ref: PMID:12467640
-''This be called "plant cuticle proper"''
+''This should be called "plant cuticle proper"''
@@ Line 136: / Line 135: @@
 ref: PMID:12467640
-''Reword as per definition of cuticle.''
+''Reword as per definition of cuticle, only in plants so we don't have to call it "plant cutin".  ''

← Older revision		Revision as of 02:51, 24 January 2012
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	ref: PMID:12467640		ref: PMID:12467640

−	''~~Should this~~ be called "plant cuticle proper"''	+	''This be called "plant cuticle proper"''
		+

← Older revision		Revision as of 02:50, 24 January 2012
Line 126:		Line 126:
	ref: PMID:12467640		ref: PMID:12467640

−	''this ~~should~~ be called "plant cuticle proper"''	+	''Should this be called "plant cuticle proper"''