POC-MorphoBank Webex meeting 07-05-2011 - Revision history

Cooperl: /* Links to images */

2011-07-07T15:26:00Z

Links to images

2011-07-07T15:04:01Z

Links to images

2011-07-07T15:03:19Z

Future directions

2011-07-07T15:01:34Z

Other

2011-07-07T14:09:55Z

Future directions

2011-07-07T14:07:18Z

Ideas/Plans from PO: two prong approach:

2011-07-06T21:28:29Z

Other

2011-07-06T20:55:37Z

2011-07-06T20:54:52Z

References and Links

2011-07-06T20:50:41Z

Future directions

← Older revision		Revision as of 15:26, 7 July 2011
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	example: http://www.gramene.org/perl/pub_search?ref_id=659		example: http://www.gramene.org/perl/pub_search?ref_id=659
−
−
−	~~abbreviation: GR_MUT~~
−
−	~~database: Gramene: A Comparative Mapping Resource for Grains.~~
−
−	~~object: Mutants~~
−
−	~~example: GR_MUT:GR:0060198~~
−
−	~~generic_url: http://www.gramene.org/~~
−
−	~~url_syntax: <nowiki>http://www.gramene.org/perl/mutant/search_mutant?id=ID number</nowiki>~~
−
−	~~example: http://www.gramene.org/perl/mutant/search_mutant?id=GR:0060198~~

	==Other==		==Other==

@@ Line 103: / Line 103: @@
 ==Links to images==
-Adding links to images for PO terms is a priority of the PO now. Morphobank has an image data base. Can we set up links between PO terms and Morphobank images?
+Adding links to images for PO terms is a priority of the PO now. MorphoBank has an image data base. Can we set up links between PO terms and MorphoBank images?
 Need a stable url for individual images, in standard format, to set up as dbxref in GO database file.

@@ Line 169: / Line 169: @@
 Needs a paragraph describing the best what are the key projects to 'ontologize'.  RW will prepare one and send it to the po-internal group.
-What will the exemplar project be? ''For bottom-up approacy, could use matrix from NSF: EF-0629817  Gymnosperms on the Tree of Life: Resolving the Phylogeny of Seed Plants or NSF: DEB-082762  From Acorus to Zingiber - Assembling the Phylogeny of the Monocots.''
+What will the exemplar project be? ''For bottom-up approach, could use matrix from NSF: EF-0629817  Gymnosperms on the Tree of Life: Resolving the Phylogeny of Seed Plants or NSF: DEB-082762  From Acorus to Zingiber - Assembling the Phylogeny of the Monocots.''
-Note of support from PO for the proposal?
+Note of support from PO for the proposal? See above
-DWS is preparing one for the TOL project and the Cladistics journal.
+DWS is preparing one for MB based on the TOL project and the Cladistics journal.
 =References and Links=

@@ Line 141: / Line 141: @@
 Comments about PATO vs PO and MB''
-''BS: PATO annotates phenotypes identified in experiments, real instances of taxonomic groups, while MB is interested in the general representation of a taxonomic group.  MOL: there may be subsequent addition of polymorphism, with discussion''
+''BS: PATO annotates phenotypes identified in experiments, real instances of taxonomic groups, while MB is interested in the general representation of a taxonomic group.''
 ''BS, PJ: The PO describes the typical or canonical (representative units), but those terms may be used to describe non-typical plants.  The PO tries to be species neutral eg. inflorescence is PO term representing the general state, with synonyms such as spike, panicle, ear,  ''

@@ Line 167: / Line 167: @@
 Needs a paragraph describing the best what are the key projects to 'ontologize'.  RW will prepare one and send it to the po-internal group.
-What will the exemplar project be?
+What will the exemplar project be? ''For bottom-up approacy, could use matrix from NSF: EF-0629817  Gymnosperms on the Tree of Life: Resolving the Phylogeny of Seed Plants or NSF: DEB-082762  From Acorus to Zingiber - Assembling the Phylogeny of the Monocots.''
 Note of support from PO for the proposal?

← Older revision		Revision as of 14:07, 7 July 2011
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	''We need a data set to test the concept. Can DWS or MAG provide one?''		''We need a data set to test the concept. Can DWS or MAG provide one?''
		+
		+	''DWS can provide a matrix from: NSF: EF-0629817 Gymnosperms on the Tree of Life: Resolving the Phylogeny of Seed Plants or NSF: DEB-082762 From Acorus to Zingiber - Assembling the Phylogeny of the Monocots''

	==Links to images==		==Links to images==

@@ Line 155: / Line 155: @@
 RW: Ideally, nice to have the association between the character state and species/taxon, similar to gene annotations in the PO
-Published projects are available publically
+Published projects are available publicly
 ==Future directions==

← Older revision	Revision as of 20:55, 6 July 2011
(No difference)

← Older revision		Revision as of 20:54, 6 July 2011
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	=References and Links=		=References and Links=
		+
		+	MOL sent this paper for further info: [[File:O'Leary and Kaufman 2011.pdf]]
		+

	[http://kb.phenoscape.org/ Phenoscape]		[http://kb.phenoscape.org/ Phenoscape]