PO-FNA Conf Call Nov 18th, 2011 - Revision history

Cooperl: /* Phenotype/character terms form FNA */

2011-11-21T17:42:26Z

Phenotype/character terms form FNA

2011-11-21T17:39:38Z

2011-11-18T23:03:49Z

2011-11-18T20:11:56Z

2011-11-18T20:11:27Z

need unique IDs for FNA terms

2011-11-18T20:09:21Z

FNA terms that are too general for PO

2011-11-18T20:08:02Z

FNA terms that map to obsolete PO terms

2011-11-18T20:07:34Z

FNA terms that map to obsolete PO terms

2011-11-18T20:05:04Z

PO-FNA mapping

2011-11-18T19:54:06Z

FNA terms that map to >1 PO term

@@ Line 123: / Line 123: @@
 ''Some of these we may be able to map to PO terms (e.g., indument to epidermis or plant substance). Others can be mapped by including the parent structure from the context, e.g., a beak of what or a blotch on what.''
-==Phenotype/character terms form FNA==
+==Phenotype/character terms from FNA==
-*begin work on phenotype/character terms, inlcuding the 101 from this list plus all of the FNA character terms
+* HC sent us the file: FNAv19Traits2PTO.xls

@@ Line 2: / Line 2: @@
 In attendance: ''Laurel Cooper (OSU), Pankaj Jaiswal (OSU), Ramona Walls (NYBG)''
 Collaborators: ''Hong Cui (UofA), James Macklin (absent)''
 Back to: Main [[Flora_of_North_America-_FNA]] page

← Older revision		Revision as of 23:03, 18 November 2011
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−	Collaborators: ''Hong Cui, James Macklin (absent)''	+	Collaborators: ''Hong Cui (UofA), James Macklin (absent)''

@@ Line 1: / Line 1: @@
 '''POC-FNA meeting, Webex Conference Call; Date: Monday Nov 14th, 2011 10am (PST)'''
-Planned In attendance: ''Laurel Cooper (OSU), Pankaj Jaiswal (OSU), Ramona Walls (NYBG)''
+In attendance: ''Laurel Cooper (OSU), Pankaj Jaiswal (OSU), Ramona Walls (NYBG)''
-Collaborators: ''Hong Cui, James Macklin''
+Collaborators: ''Hong Cui, James Macklin (absent)''

← Older revision		Revision as of 20:11, 18 November 2011
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	plus many others		plus many others
		+
		+	''All agreed that it would be best to have unique ID for FNA terms. Not sure if there should be one id for each definitions (synonyms share same id) or one id per term/definition combination (all unique words plus all unique concept have a different id).''

	===FNA terms that map to >1 PO term===		===FNA terms that map to >1 PO term===

← Older revision		Revision as of 20:08, 18 November 2011
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	multiple fruit: mapped to obsolete PO:0020086 multiple fruit, but now maps as synonym to PO:fruit		multiple fruit: mapped to obsolete PO:0020086 multiple fruit, but now maps as synonym to PO:fruit

		+	''POC will discuss these at their weekly meetings.''

	*3 have been replaced by GO terms:		*3 have been replaced by GO terms:

← Older revision		Revision as of 20:07, 18 November 2011
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	wall: maps to obsolete pollen wall PO:0020059 now GO:0043667 (also maps to 6 other PO terms)		wall: maps to obsolete pollen wall PO:0020059 now GO:0043667 (also maps to 6 other PO terms)
		+
		+	''FNA should include mappings to GO in future text mining. RW included list of GO terms in the mapping to PO terms, where appropriate.''
		+
		+	''Even in FNA term maps to obsolete PO term, that term still exists. There is usually something pointing from the obsolete term to a new term in PO or GO.''
		+
		+	''If we really need to, there are ways to bring obsolete terms back in to circulation (by adding a replacement term).''

	===FNA terms that are too general for PO===		===FNA terms that are too general for PO===

@@ Line 41: / Line 41: @@
 '''*Manual editing of the mapping file by RW to Release #16:'''
 See detailed notes in the excel file: "FNA_Term_glossary(HC 7-18-11)_to_PO_release16.xlsx"
 =Mapping results=

← Older revision		Revision as of 19:54, 18 November 2011
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	FNA:blade matches to PO:lamina and PO:leaf lamina		FNA:blade matches to PO:lamina and PO:leaf lamina
		+
		+	''When possible, we should make general term (e.g., organ apex, lamina) and only map FNA term to the general term. FNA can use reasoner to find all of the subtypes. If it is not possible to create one general term (e.g., tendril), we will need to map to each term separately.''
		+
		+	''Should have a separate line for each unique concept (each line is one FNA id and one PO id).''
		+
		+	''For future text mining, HC will try to include the parent structure (e.g., leaf base, rather than just base), so it is more clear what to map to.''

	===FNA terms that map to obsolete PO terms===		===FNA terms that map to obsolete PO terms===