PAG 2012 Ontology workshop - Revision history

Cooperl: /* PAG 2012 Ontology workshop */

2012-01-25T18:50:47Z

PAG 2012 Ontology workshop

2012-01-25T18:50:25Z

PAG 2012 Ontology workshop

2012-01-25T18:49:14Z

PAG 2012 Ontology workshop

2012-01-25T18:47:02Z

PAG 2012 Ontology workshop

2012-01-25T18:46:39Z

PAG 2012 Ontology workshop

2012-01-25T18:43:44Z

Panel Discussion

2012-01-25T18:43:23Z

Panel Discussion

2012-01-25T18:43:14Z

PAG 2012 Ontology workshop

2012-01-25T18:42:49Z

2012-01-25T18:41:57Z

Suggestions for speakers for next year:

@@ Line 22: / Line 22: @@
-:05 AM W734 '''"Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa"
+:05 AM W734 '''"Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa"'''
 '''
 Laurel Cooper, Oregon State University

@@ Line 6: / Line 6: @@
 Laurel Cooper (Oregon State University) and Pankaj Jaiswal(Oregon State University)
-Date: Saturday, January 14, 2012
+Date: Saturday, January 14, 2012, Time: 10:20 AM-12:30 PM
-Room: Royal Palm Salon 5-6
+:20 AM  '''Introductory Remarks: Pankaj Jaiswal'''
-:25 AM W732 "GO and PO Facilitate Integration and Mining of Arabidopsis Data"
+:25 AM W732 '''"GO and PO Facilitate Integration and Mining of Arabidopsis Data"'''
 Eva Huala, [http://www.arabidopsis.org/ TAIR] Carnegie Institution for Science
 :45 AM  W733 "Protein Ontology (PRO) for integration of knowledge on proteins, complexes and PTMs"
 Cathy H. Wu, University of Delaware,  [http://pir.georgetown.edu/pirwww/index.shtml PIR]
 Laurel Cooper, Oregon State University
 :25 AM W735 "B73 Maize Gene Expression Atlas – a Plant Ontology Use Case"
 Mary Schaeffer, USDA-ARS and University of Missouri, [http://www.maizegdb.org/ MaizeGDB]
 :45 AM W736 "NCBO Web Services and Development of Semantic Applications"
 Trish Whetzel, [http://www.bioontology.org/ The National Center for Biomedical Ontology]

@@ Line 20: / Line 20: @@
 :45 AM  W733 "Protein Ontology (PRO) for integration of knowledge on proteins, complexes and PTMs"
-[http://pir.georgetown.edu/pirwww/index.shtml PIR] Cathy H. Wu, University of Delaware
+Cathy H. Wu, University of Delaware,  [http://pir.georgetown.edu/pirwww/index.shtml PIR]
 :05 AM W734 "Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa"
@@ Line 28: / Line 28: @@
 :25 AM W735 "B73 Maize Gene Expression Atlas – a Plant Ontology Use Case"
-Mary Schaeffer, USDA-ARS and University of Missouri
+Mary Schaeffer, USDA-ARS and University of Missouri, [http://www.maizegdb.org/ MaizeGDB]
 :45 AM W736 "NCBO Web Services and Development of Semantic Applications"
-Trish Whetzel, The National Center for Biomedical Ontology
+Trish Whetzel, [http://www.bioontology.org/ The National Center for Biomedical Ontology]

@@ Line 15: / Line 15: @@
 :25 AM W732 "GO and PO Facilitate Integration and Mining of Arabidopsis Data"
 Eva Huala, [http://www.arabidopsis.org/ TAIR] Carnegie Institution for Science
 :45 AM  W733 "Protein Ontology (PRO) for integration of knowledge on proteins, complexes and PTMs"
 [http://pir.georgetown.edu/pirwww/index.shtml PIR] Cathy H. Wu, University of Delaware
 :05 AM W734 "Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa"
 Laurel Cooper, Oregon State University
 :25 AM W735 "B73 Maize Gene Expression Atlas – a Plant Ontology Use Case"
 Mary Schaeffer, USDA-ARS and University of Missouri
 :45 AM W736 "NCBO Web Services and Development of Semantic Applications"
 Trish Whetzel, The National Center for Biomedical Ontology

@@ Line 4: / Line 4: @@
 Organizers:
-Laurel Cooper(Oregon State University) and Pankaj Jaiswal(Oregon State University)
+Laurel Cooper (Oregon State University) and Pankaj Jaiswal(Oregon State University)
 Date: Saturday, January 14, 2012
@@ Line 15: / Line 15: @@
 :25 AM W732 "GO and PO Facilitate Integration and Mining of Arabidopsis Data"
-Eva Huala, Carnegie Institution for Science
+Eva Huala, [http://www.arabidopsis.org/ TAIR] Carnegie Institution for Science
 :45 AM  W733 "Protein Ontology (PRO) for integration of knowledge on proteins, complexes and PTMs"
-Cathy H. Wu, University of Delaware
+[http://pir.georgetown.edu/pirwww/index.shtml PIR] Cathy H. Wu, University of Delaware
 :05 AM W734 "Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa"

@@ Line 34: / Line 34: @@
 Questions and discussion:
 There was interest arising from the Eva's presentation regarding their work on developing Journal collaborations for annotations.  Since 2008 they now have working with Journals to have authors annotate their own research material as part of the submission process.  This started in 2008 with Plant Physiology and now includes about 8 or 10 journals.  This started as an excel spreadsheet, but they now have an online submission form.  **Currently this does not include PO annotations (this was one of the questions that was asked).
 Once the information is received it is reviewed by the TAIR curator teams.

← Older revision		Revision as of 18:42, 25 January 2012
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−	~~Title of~~ workshop: ~~'''~~[http://pag.confex.com/pag/xx/webprogrampreliminary/Session1272.html Use of Ontologies for Organizing Plant and Animal Genomics Data]~~'''~~	+	=PAG 2012 Ontology workshop=
		+
		+	Link to workshop page on PAG site: [http://pag.confex.com/pag/xx/webprogrampreliminary/Session1272.html Use of Ontologies for Organizing Plant and Animal Genomics Data]

	Organizers:		Organizers:

← Older revision		Revision as of 18:41, 25 January 2012
Line 42:		Line 42:


−	=Suggestions for speakers for next year:=	+	==Suggestions for speakers for next year:==
	Should have talks from people working on ontology applications, rather than ontology development, to show utility.		Should have talks from people working on ontology applications, rather than ontology development, to show utility.