New SF tracker items, fall 2010 - Revision history

Rwalls at 18:28, 12 October 2010

2010-10-12T18:28:29Z

Rwalls: /* Newer tracker items and other issues with the PSO */

2010-10-12T17:43:17Z

Newer tracker items and other issues with the PSO

Rwalls at 17:31, 12 October 2010

2010-10-12T17:31:33Z

Rwalls: Created page with '===Newer tracker items and other issues with the PSO=== *Adding [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] request…'

2010-10-12T17:30:49Z

Created page with '===Newer tracker items and other issues with the PSO=== *Adding [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] request…'

New page

===Newer tracker items and other issues with the PSO===

*Adding [https://sourceforge.net/tracker/index.php?func=detail&aid=3030644&group_id=76834&atid=835555 Musa terms] requested by Rosemary Shrestha (July 2010)

*Root terms

-Adding/modifying the [https://sourceforge.net/tracker/index.php?func=detail&aid=2899934&group_id=76834&atid=835555 root terms] submitted by Rich Zobel (Nov 2009).

We (sort of) dealt with the upper level root terms that Rich requested: [https://sourceforge.net/tracker/?func=detail&aid=3066301&group_id=76834&atid=835555 basal root], [https://sourceforge.net/tracker/?func=detail&aid=3066295&group_id=76834&atid=835555 primary root (taproot)], [https://sourceforge.net/tracker/?func=detail&aid=3066305&group_id=76834&atid=835555 shoot-borne root], but we still need to deal with the rest. Includes 3 new terms: [https://sourceforge.net/tracker/?group_id=76834&atid=835555 internode root], [https://sourceforge.net/tracker/index.php?func=detail&aid=3079725&group_id=76834&atid=835555 non-pericyclic lateral root], [https://sourceforge.net/tracker/?func=detail&aid=3079725&group_id=76834&atid=835555 non-pericyclic basal root].

He also suggested modifications to the definitions of the following additional 14 terms: [[List of root terms]]

-adventitious root- this was flagged for consideration during the revision of [https://sourceforge.net/tracker/?func=detail&aid=3066305&group_id=76834&atid=835555 shoot-borne root (PO:0000042)]

*Adding [https://sourceforge.net/tracker/?func=detail&aid=3040048&group_id=76834&atid=835555 Legume terms] submitted by Austin Mast*

Taproot, Stem Hair, Prickles, Fascicle, Bristle (used in key as "Stipules spinose or bristles"; might be
thought of as a quality, rather than a structure), Phyllode, Banner (as in a legume flower), Wing (as in a legume flower), Keel (as in a legume flower), Anther pore and anther slit, Locule

*[https://sourceforge.net/tracker/?func=detail&aid=2982384&group_id=76834&atid=835555 embryo]

We have a proposed definition of embryo from 7/2010. We need to finalize this and close the tracker.

*New terms requested by reviewers (from Ahrestani, Kramer and Rudall)

-Elena Kramer suggested that we add the term [https://sourceforge.net/tracker/?func=detail&aid=3080941&group_id=76834&atid=835555 spur] to the PSO and consider dealing with [https://sourceforge.net/tracker/?func=detail&aid=3080945&group_id=76834&atid=835555 common primordia] in the PGDSO.

-Paula Rudall commented that the current definition of [https://sourceforge.net/tracker/?func=detail&aid=3080937&group_id=76834&atid=835555 central cell] has a different meaning in gymnosperms.

-TraitNet requested several new terms for the PSO: [https://sourceforge.net/tracker/?func=detail&aid=3080906&group_id=76834&atid=835555 corm], [https://sourceforge.net/tracker/?func=detail&aid=3080910&group_id=76834&atid=835555 spine], [https://sourceforge.net/tracker/?func=detail&aid=3080911&group_id=76834&atid=835555 podarium], [https://sourceforge.net/tracker/?func=detail&aid=3080913&group_id=76834&atid=835555 pneumatophore], [https://sourceforge.net/tracker/?func=detail&aid=3080915&group_id=76834&atid=835555 stele], [https://sourceforge.net/tracker/?func=detail&aid=3080916&group_id=76834&atid=835555 diaspore], [https://sourceforge.net/tracker/?func=detail&aid=3080919&group_id=76834&atid=835555 cone], [https://sourceforge.net/tracker/?func=detail&aid=3080922&group_id=76834&atid=835555 sorus], and [https://sourceforge.net/tracker/?func=detail&aid=3080925&group_id=76834&atid=835555 tendril].

*[https://sourceforge.net/tracker/?group_id=76834&atid=835555 Primordium]

Need a class primordium, and need to make one definition for it. Also need to organize primordium terms

We may also want to link primordia to stages in the PGDSO, where appropriate.

For example, ovule primordium (PO:0000018) participates in ovule primordium visible (PO:0007620) or ovule primordium visible (PO:0007620) has_participant ovule primordium (PO:0000018).

*reorganization of shoot system

We started working on this during the last round of revisions (with bud, and terms like reproductive shoot system), but it still needs some tweaking. Need to discuss [https://sourceforge.net/tracker/?func=detail&aid=3071947&group_id=76834&atid=835555 vegetative shoot system].

*primordium, meristem, bud, shoot system

Doesn't have a tracker item. Should consider aligning the children of these terms.

*[https://sourceforge.net/tracker/?func=detail&aid=3007368&group_id=76834&atid=835555 axil]: We need to discuss whether or not to have a generic term 'axil' and, if so, how it should be defined. See also older tracker item [https://sourceforge.net/tracker/index.php?func=detail&aid=1681621&group_id=76834&atid=835555 leaf base vs. axil?].

*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.

← Older revision		Revision as of 18:28, 12 October 2010
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	*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.		*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.
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		+	*[https://sourceforge.net/tracker/?func=detail&aid=3030032&group_id=76834&atid=835555 egg cell] and [https://sourceforge.net/tracker/?func=detail&aid=3030033&group_id=76834&atid=835555 sperm cell]: we need to finalize the definitions for these terms, and make sure they work for all plants. May want to consider naming them plant sperm cell and plant egg cell, so they can work with the CL.


	*better organization of descendants of portion of plant tissue: this category is the home for many terms w/o parents. Needs to be organized better, add some new categories for tissue types. Does not have an SF tracker item.		*better organization of descendants of portion of plant tissue: this category is the home for many terms w/o parents. Needs to be organized better, add some new categories for tissue types. Does not have an SF tracker item.
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		+	*better organization of descendants of plant cell: Needs to be organized better, maybe add some new categories for cell types.
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		+	*[https://sourceforge.net/tracker/?func=detail&aid=3030100&group_id=76834&atid=835555 placenta]: this new term was added during the last round of revisions, but we have never discussed it. Need to make sure definition is good.
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		+	*[https://sourceforge.net/tracker/?func=detail&aid=3072078&group_id=76834&atid=835555 strobilus]: this new term was added during the last round of revisions, but we have never discussed it. Need to make sure definition is good. Also, need to fix spelling in live version (stobilus).

← Older revision		Revision as of 17:43, 12 October 2010
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	*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.		*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.
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		+	*better organization of descendants of portion of plant tissue: this category is the home for many terms w/o parents. Needs to be organized better, add some new categories for tissue types. Does not have an SF tracker item.

← Older revision		Revision as of 17:31, 12 October 2010
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	===Newer tracker items and other issues with the PSO===		===Newer tracker items and other issues with the PSO===

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	*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.		*[https://sourceforge.net/tracker/index.php?func=detail&aid=3011071&group_id=76834&atid=835555 cortex]: We need a brief discussion of how to define cortex (see tracker item). Once we decide this, we can define other tissue types similarly.
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		+	Back to [[POC_Conf._Call_10-13-10]]