Minutes and Agenda 2-23-10 - Revision history

Rwalls: add item re. presentations

2010-02-27T14:52:33Z

add item re. presentations

2010-02-25T19:07:40Z

2010-02-25T19:06:23Z

2010-02-25T18:57:24Z

2010-02-25T18:56:46Z

2010-02-24T20:01:57Z

2010-02-24T19:59:53Z

2010-02-24T19:47:55Z

2010-02-24T19:26:14Z

2010-02-24T14:35:20Z

← Older revision		Revision as of 14:52, 27 February 2010
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	''Our discussion raised the issue of needed a term such as root system, with children such as rhizoids, roots, and adventitious roots. Will also need some such term for shoots.''		''Our discussion raised the issue of needed a term such as root system, with children such as rhizoids, roots, and adventitious roots. Will also need some such term for shoots.''
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		+
		+	'''New Item: Presentations at national meetings this summer.''' Dennis and Ramona (with Ramona presenting) will prepare a oral presentation for the Botanical Society of America meeting this summer, for the Structural and Developmental Section. They will emphasize the use of the ontology as a vocabulary reference, and invite annotations. Maybe prepare a poster too? Laural and Pankaj will give a workshop at the ASPB (?) meeting at the same time. Group will send around abstracts for presentations before submitting.

← Older revision		Revision as of 19:07, 25 February 2010
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	Comment from BS: Make sure the definitions are consistent with the cross products to the PO term 'portion of plant tissue'		Comment from BS: Make sure the definitions are consistent with the cross products to the PO term 'portion of plant tissue'

−	Final Def'n: '''A plant structure that is a functional unit, is a proper part of a plant and includes portions of tissues of at least two different types ~~which~~ derive from a common developmental path.'''	+	Final Def'n: '''A plant structure that is a functional unit, is a proper part of a plant, and includes portions of tissues of at least two different types that derive from a common developmental path.'''

@@ Line 55: / Line 55: @@
 ''We agreed that the definition was okay as is.''
-''We must remember to include cross products to terms references in definitions, such as the reference here to portion of plant tissue.''
+''We must remember to include cross products to terms referenced in definitions, such as the reference here to portion of plant tissue.''
 Comment from BS: Make sure the definitions are consistent with the cross products to the PO term 'portion of plant tissue'

@@ Line 35: / Line 35: @@
 ''Other parts of definition should go in the comments.''
-'''Final definition: A cell that is part of a plant and that has as part a plant cell wall.'''
+'''Final definition: A cell that is part of a plant and that has as its part a plant cell wall.'''
 Comments: Be sure to add cross references to GO for definitions of cell and plant-type cell wall (their term).

@@ Line 1: / Line 1: @@
 Minutes and agenda for the POC Conference Call  2-23-10
-Present: Laurel Cooper, Pankaj Jaiswal, Ramona Wells, Dennis Stevenson, Chris Mungall
+Present: Laurel Cooper, Pankaj Jaiswal, Ramona Walls, Dennis Stevenson, Chris Mungall
 ''Minutes of the meeting have been added in italics to the end of each agenda item. -RW''
@@ Line 35: / Line 35: @@
 ''Other parts of definition should go in the comments.''
-'''Final definition: A cell that is part of a plant and that has as its parts a plant cell wall.'''
+'''Final definition: A cell that is part of a plant and that has as part a plant cell wall.'''
 Comments: Be sure to add cross references to GO for definitions of cell and plant-type cell wall (their term).

@@ Line 105: / Line 105: @@
 def: A plant structure that is composed of multiple organs but is not an organ. (Maybe something about a bona fide boundary, some way to distinguish it from whole plant). Examples: flower, perianth, inflorescence. collective structure or compound organ? -tabled for next discussion.
-. Term request from TAIR for "gamete"- proposed (RW): add gamete to the ontology (is_a parent, plant cell), with sperm cell and egg cell as siblings under a common parent 'gamete'. -tabled for next discussion.
+'''5.Term request from TAIR for "gamete"'''- proposed (RW): add gamete to the ontology (is_a parent, plant cell), with sperm cell and egg cell as siblings under a common parent 'gamete'. -tabled for next discussion.
-. Assignment of Term numbers:
+'''6. Assignment of Term numbers:'''
 New term numbers are to be used for the terms that are being added.
@@ Line 113: / Line 113: @@
 Existing:
 Group identifier range (from-to)
 TAIR: 0000001-0005000
@@ Line 125: / Line 126: @@
 New numbers to be added:
-0025001-0030000 PO Consortium
+0025001-0030000 PO Consortium (for terms we decide upon as a group)
-0030001-0035000 NYBG
+0030001-0035000 NYBG ( New terms from Dennis and Ramona)
 0035001-0040000 Cornell/MAG

@@ Line 32: / Line 32: @@
 ''We decided that much of the existing proposed definitions was redundant with GO, and we should have simpler definitions.''
-''Egg and sperm are not cells – nucleus with membrane – so definition of cell is still okay.''
+''Egg and sperm are not cells – nucleus with membrane – so definition of cell is still okay.''????
 ''Other parts of definition should go in the comments.''
@@ Line 91: / Line 91: @@
-'''''Items 3 through 6 were tabled for the following discussion.'''''
+'''''Items 3 through 5 were tabled for the following discussion.'''''
@@ Line 109: / Line 109: @@
 . Assignment of Term numbers:
-We need a set of numbers for the POC curators ( Lol and Ramona, mostly)- existing:
+New term numbers are to be used for the terms that are being added.
 Group identifier range (from-to)
 TAIR: 0000001-0005000
-Gramene/OSU: 0005001-0010000
+Gramene/OSU (Jaiswal lab): 0005001-0010000
 IRIS-IRRI: 0010001-0015000
@@ Line 131: / Line 131: @@
 0035001-0040000 Cornell/MAG
-Action item:  Update on POC webpage and PO wiki
+Action item:  Laurel will Update on POC webpage and PO wiki
-.  Next conference call- Tues Mar 2nd at 11 am PST
+.  Next conference call-
-''Dennis and Barry will not be available next Tuesday at the regular time, so we will do a Doodle poll to set up next week's meeting.''
+''Dennis and Barry will not be available next Tuesday at the regular time, so Laurel will set up a Doodle poll to set up next week's meeting.''