Minutes POC Conf Call 4-1-10 - Revision history

Cooperl at 20:44, 2 April 2010

2010-04-02T20:44:57Z

Cooperl at 18:15, 2 April 2010

2010-04-02T18:15:13Z

Cooperl at 17:14, 2 April 2010

2010-04-02T17:14:35Z

Cooperl: moved Agenda 4-1-10 to Minutes POC Conf Call 4-1-10

2010-04-02T16:48:09Z

moved Agenda 4-1-10 to Minutes POC Conf Call 4-1-10

Rwalls: changed leaflet margin from part of to is a leaf margin

2010-04-02T15:08:10Z

changed leaflet margin from part of to is a leaf margin

Rwalls at 13:22, 2 April 2010

2010-04-02T13:22:16Z

Rwalls: additional comments under spore, organ margin, and leaf margin

2010-04-02T13:15:30Z

additional comments under spore, organ margin, and leaf margin

Rwalls at 13:06, 2 April 2010

2010-04-02T13:06:43Z

Cooperl at 22:01, 1 April 2010

2010-04-01T22:01:09Z

Cooperl at 21:41, 1 April 2010

2010-04-01T21:41:20Z

@@ Line 87: / Line 87: @@
 Old def'n: "A circular arrangement of phyllome".''
-''We had an extensive discussion regarding the definition and the relationships and decided that we should retain this term as a child of CPS and make corolla, calyx and perianth its children.  Perhaps androecium and gynoecium should also be children of phyllome whorl?  We need to come back and work on the child terms of phyllome whorl. ''
+''We had an extensive discussion regarding the definition and the relationships and decided that we should retain this term as a child of CPS and make corolla, calyx and epicalyx its children.  Perhaps androecium and gynoecium should also be children of phyllome whorl?  We need to come back and work on the child terms of phyllome whorl. ''
 ''New def'n: A CPS that is an arrangement of phyllomes attached at a common node.''

← Older revision		Revision as of 18:15, 2 April 2010
Line 206:		Line 206:


−	'''11. Next meeting scheduled for Tuesday April 6th at 10am''' Back to our normal day, Tuesday and we will meet at ~~the~~ 10am, unless it is a problem for PJ.	+	'''11. Next meeting scheduled for Tuesday April 6th at 10am''' Back to our normal day, Tuesday and we will meet at 10am (PDT), unless it is a problem for PJ.

@@ Line 73: / Line 73: @@
 *infructescence- "The grouping or arrangement in which fruits are borne on a plant."
-*involucre- "A whorl of bracts at the base of a cluster of flowers as found in Asteraceae or Compositae."
+*involucre- "A whorl of bracts at the base of a cluster of flowers as found in Asteraceae or Compositae. (we discussed that this is not actually a whorl, but a spiral arrangement of bracts)"
 *perianth- "Non-fertile parts of a flower surrounding the fertile organs, collectively the calyx and corolla of a flower, or only a single whorl."
@@ Line 87: / Line 87: @@
 Old def'n: "A circular arrangement of phyllome".''
-''We had an extensive discussion regarding the definition and the relationships and decided that we should retain this term as a child of CPS and make corolla, calyx and perianth its children.''
+''We had an extensive discussion regarding the definition and the relationships and decided that we should retain this term as a child of CPS and make corolla, calyx and perianth its children.  Perhaps androecium and gynoecium should also be children of phyllome whorl?  We need to come back and work on the child terms of phyllome whorl. ''
 ''New def'n: A CPS that is an arrangement of phyllomes attached at a common node.''
 '''5. Organ margin'''  (See SF Tracker: [https://sourceforge.net/tracker/?func=detail&aid=2971897&group_id=76834&atid=835555/ organ margin])

@@ Line 114: / Line 114: @@
 * PO:0005021: sepal margin
 * PO:0020128: leaf margin
-* PO:0006034: leaflet margin (leaflet is_a cardinal organ part), ''should be part of leaf margin''
+* PO:0006034: leaflet margin (leaflet is_a cardinal organ part), ''should be is_a leaf margin''
 ''Comments: Need to add a term for phyllome margin, and make appropriate relationships to the children of phyllome.  Also need to create stamen margin and carpel margin and add comment that only flattened stamens or carpels can have a margin (as with petiole margin).''

@@ Line 128: / Line 128: @@
 * PO:0025010: petiole margin
-''We agreed that this term should be is_a organ margin''
+''We agreed that this term should be is_a organ margin.''
 ''Will also make leaflet margin a child of leaf margin.''

← Older revision	Revision as of 16:48, 2 April 2010
(No difference)

← Older revision		Revision as of 13:06, 2 April 2010
Line 41:		Line 41:


−	''We discussed the cases in fungi and algae where a 'spore' might be the product of the fusion of two gametes (zygospores). We agreed to define it as: final def'n: A plant cell that arises through meiosis and develops into a gametophyte. This will be added as a new term, as above.''	+	''We discussed the cases in fungi and algae where a 'spore' might be the product of the fusion of two gametes (zygospores). In this case, zygospore can be a synonym of zygote. We agreed to define it as: final def'n: A plant cell that arises through meiosis and develops into a gametophyte. This will be added as a new term, as above.''

@@ Line 128: / Line 128: @@
 * PO:0025010: petiole margin
-'''7. Re-organization of existing terms'''
+'''7. Re-organization of existing terms'''  Tabled for next week's discussion.
 *floral bract and inflorescence bract
@@ Line 156: / Line 156: @@
 Question: There is a similar page on the POC website- http://www.plantontology.org/docs/otherdocs/poc_outreach.html
-Maybe we could have both links go to the same place, so we don't have to keep two pages updated?
+Maybe we could have both links go to the same place, so we don't have to keep two pages updated? Pankaj siad it was fine to have a link to the PO Wiki Outreach page on the POC webpage.  Laurel will look after.
-Also:  POC Homepage (http://www.plantontology.org) has been updated with upcoming presentations
+Also:  POC Homepage (http://www.plantontology.org) has been updated with upcoming presentations.
 '''9.  Upcoming Conferences and Meetings:'''  Updates
-* '''Bio-Ontologies 2010: Semantic Applications in Life Sciences'''. July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona may be going (?). Abstract/short paper submission deadline 4/15/10.
+* '''Bio-Ontologies 2010: Semantic Applications in Life Sciences'''. July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona may be going (?). Abstract/short paper submission deadline 4/15/10. Registration deadline May 28th, $325.
 We need to discuss what would be the most appropriate type of presentation for this meeting; there are 3 categories:
@@ Line 173: / Line 173: @@
 -Poster abstracts, up to 1 page (posters will be up for 2 days, with at least 1 poster session) Poster authors can also do a flash update.
-Laurel and Ramona are preparing a short paper for submission to to Bio-Ontologies meeting.
+''Everyone agreed that is would make the most sense for Laurel and Ramona to prepare a short paper (up to 1 page) for submission to to Bio-Ontologies meeting for a poster presentation and possibly a short flash update talk.''
-*  '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010. Boston, Mass.  Laurel is probably not going.
+*  '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010. Boston, Mass.  This is directly after the Bio-Ontologies meeting, but both Laurel and Ramona felt its not really worth the time and money (Reg'n = ~$900) to stay for this part.
 *  '''American Society of Plant Biology (ASPB)''' July 31-Aug 4th 2010, Montreal, Quebec, Canada. Laurel, Pankaj going, mini symposium presentation (hopefully) or poster. Abstract submitted 3/12/10.
-Laurel is looking into the possibility of hosting a booth with other database groups, for example SGN, TAIR. Gramene. She is looking into costs and interest. We should prepare a brochure to distribute, similar to the one Gramene has.
+''Laurel is looking into the possibility of hosting a booth with other database groups. SGN and maizeGDB are interested and she will check with  TAIR and Gramene. The estimated costs are $1600 for the plain booth (no carpet, electricity or tables).  This could be shared or PJ said POC could host it.''
-Annotation workshop with Gramene has been tentatively approved, waiting for details.
+We should prepare a brochure to distribute, similar to the one Gramene has.
 *'''Botanical Society of America (BSA)'''- July 31-Aug 4th 2010.  Providence, Rhode Island. Ramona presenting, Dennis attending, 15 minute oral presentation, '''Abstract submitted 3/26/10'''.
@@ Line 192: / Line 193: @@
 ''from 3-23-10:
 Dennis and Alejandra are planning to attend IBC2011. Dennis will work on possible symposium proposals. Pankaj can be co-organizer if necessary. Need 4-6 speakers for the symposium. Laurel and Ramona are interested in going if funds are available''
@@ Line 204: / Line 206: @@
-'''11. Next meeting scheduled for Tuesday April 6th at 11am'''  Back to our normal day and time slot unless Tuesday 10am works better.
+'''11. Next meeting scheduled for Tuesday April 6th at 10am'''  Back to our normal day, Tuesday and we will meet at the 10am, unless it is a problem for PJ.