Minutes 3-3-10 - Revision history

Cooperl at 17:46, 4 March 2010

2010-03-04T17:46:59Z

Cooperl at 23:12, 3 March 2010

2010-03-03T23:12:56Z

Cooperl at 22:57, 3 March 2010

2010-03-03T22:57:59Z

Cooperl at 22:15, 3 March 2010

2010-03-03T22:15:32Z

Cooperl at 22:11, 3 March 2010

2010-03-03T22:11:13Z

Cooperl at 21:51, 1 March 2010

2010-03-01T21:51:31Z

Cooperl at 20:51, 25 February 2010

2010-02-25T20:51:02Z

Cooperl at 20:48, 25 February 2010

2010-02-25T20:48:44Z

Cooperl at 20:11, 25 February 2010

2010-02-25T20:11:28Z

Cooperl at 20:10, 25 February 2010

2010-02-25T20:10:52Z

@@ Line 9: / Line 9: @@
 We discussed the pros and cons of whether or not the parent term "''in vitro'' cultured cell, tissue and organ" could be eliminated or made a separate namespace, as was proposed in Ithaca. It was decided to create two new parent terms directly under plant structure:
-"''in vitro'' cultured plant structure" and "''In vivo'' plant structure".
+"''in vitro'' plant structure" and "''In vivo'' plant structure".
 All the terms currently under "plant structure" will go under the new "''In vivo'' plant structure" parent.  These new parent terms will be posted on the SourceForge PO tracker, so everyone can review them. Also, the changes will be made and displayed on the dev browser, so everyone can see how the new parent terms will work.

@@ Line 22: / Line 22: @@
 New Def'n: An anatomical structure that is or was part of a plant, or was derived from a part of a plant.
 '''3.Term request from TAIR for "gamete"'''-
 proposed (RW): add gamete to the ontology (is_a parent, plant cell), with sperm cell and egg cell as siblings under a common parent 'gamete'.

@@ Line 4: / Line 4: @@
 Agenda:  We will continue with the discussions of the changes made at the Ithaca meeting Dec '09.  These items have been posted on SourceForge for people to comment on.
-'''1.  ''in vitro'' cultured cell, tissue and organ''' was moved out of the Plant Structure class and made a separate namespace.
+'''1.  ''in vitro'' cultured cell, tissue and organ''' was moved out of the Plant Structure class and made a separate namespace at the meeting in Ithaca.
 def: "Isolated and grown plant protoplast, cell, tissue and organ, involving, as a common factor, growth of microbe-free plant material in sterile environment, such as sterilized nutrient medium in a test tube or petri dish."
@@ Line 11: / Line 11: @@
 "''in vitro'' cultured plant structure" and "''In vivo'' plant structure".
-All the terms currently under "plant structure" will go under the new "''In vivo'' plant structure" parent.  These new parent terms will be posted on the SourceForge PO tracker, so everyone can review them.
+All the terms currently under "plant structure" will go under the new "''In vivo'' plant structure" parent.  These new parent terms will be posted on the SourceForge PO tracker, so everyone can review them. Also, the changes will be made and displayed on the dev browser, so everyone can see how the new parent terms will work.
 '''2. plant structure''' -since this is the top level term in the Ontology, we should look at it and resolve the def'n before moving on.
 def: "An anatomical structure that is or was part of a plant" [Poc:curators]
 comment: for anatomical structure: see CARO- part includes both proper parts and improper parts
 '''3.Term request from TAIR for "gamete"'''-
@@ Line 28: / Line 27: @@
 '''4.New parent terms proposed by Ramona:'''
 '''A. *cardinal organ part'''
@@ Line 43: / Line 46: @@
-   Next conference call- Tuesday March 9th- 11am
+   Next conference call- Tuesday March 9th- 11am Seemed to work for most people.

@@ Line 8: / Line 8: @@
 def: "Isolated and grown plant protoplast, cell, tissue and organ, involving, as a common factor, growth of microbe-free plant material in sterile environment, such as sterilized nutrient medium in a test tube or petri dish."
-We discussed the pros and cons of whether or  not the parent term "''in vitro'' cultured cell, tissue and organ" could be eliminated or made a separate namespace, as was proposed in Ithaca. It was decided to create two new parent terms directly under plant structure:
+We discussed the pros and cons of whether or not the parent term "''in vitro'' cultured cell, tissue and organ" could be eliminated or made a separate namespace, as was proposed in Ithaca. It was decided to create two new parent terms directly under plant structure:
-''in vitro''cultured plant structure''' and  "''In vivo'' plant structure".  All the terms currently under "plant structure" will go under the new "''In vivo'' plant structure" parent.
+"''in vitro'' cultured plant structure" and "''In vivo'' plant structure".

@@ Line 4: / Line 4: @@
 Agenda:  We will continue with the discussions of the changes made at the Ithaca meeting Dec '09.  These items have been posted on SourceForge for people to comment on.
-'''1.  ''in vitro'' cultured cell, tissue and organ''' was moved out of the Plant Structure class and made a separate class.
+'''1.  ''in vitro'' cultured cell, tissue and organ''' was moved out of the Plant Structure class and made a separate namespace.
 def: "Isolated and grown plant protoplast, cell, tissue and organ, involving, as a common factor, growth of microbe-free plant material in sterile environment, such as sterilized nutrient medium in a test tube or petri dish."

← Older revision		Revision as of 21:51, 1 March 2010
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−	'''Agenda for the POC Conference Call, ~~Date and time :TBA~~'''	+	'''Agenda for the POC Conference Call, Weds Mar 3rd, 11am PST'''

@@ Line 24: / Line 24: @@
 '''A. *cardinal organ part'''
-Note:  Cardinal organ part is in SF as "organ segment or organ part."
+Note:  Cardinal organ part was in SF originally as "organ segment or organ part."
 def: A plant structure that is a direct or immediate part of an organ that is often maximal(?) but is smaller than the organ itself. Examples include lobe, operculum, neck, petiole?, leaflet.

← Older revision		Revision as of 20:48, 25 February 2010
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	'''A. *cardinal organ part'''		'''A. *cardinal organ part'''
		+
		+	Note: Cardinal organ part is in SF as "organ segment or organ part."
		+
	def: A plant structure that is a direct or immediate part of an organ that is often maximal(?) but is smaller than the organ itself. Examples include lobe, operculum, neck, petiole?, leaflet.		def: A plant structure that is a direct or immediate part of an organ that is often maximal(?) but is smaller than the organ itself. Examples include lobe, operculum, neck, petiole?, leaflet.

← Older revision		Revision as of 20:11, 25 February 2010
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−	'''2. plant structure''' ~~Since~~ this is the top level term in the Ontology, we should look at it and resolve the def'n before moving on.	+	'''2. plant structure''' -since this is the top level term in the Ontology, we should look at it and resolve the def'n before moving on.