Initial Meeting- Aug 2011 - Revision history

Cooperl: moved Submission of Association files for the Kaeppler gene expression data from MaizeGDB- Aug 2011 to Initial Meeting- Aug 2011

2012-04-11T21:14:23Z

2011-08-22T17:59:42Z

2011-08-22T17:59:30Z

2011-08-22T17:58:28Z

Plan of action:

2011-08-05T22:30:32Z

Mappings between the maize tissues and PO terms

2011-08-05T22:30:14Z

Mappings between the maize tissues and PO terms

2011-08-05T22:29:57Z

Mappings between the maize tissues and PO terms

2011-08-04T19:51:13Z

Plan of action:

2011-08-04T19:41:51Z

Issues and concerns

2011-08-04T19:36:12Z

Mappings between the maize tissues and PO terms

@@ Line 108: / Line 108: @@
 =Plan of action:=
 * Mary will work with JE to get SVN access set up, ''done''
 *PO will review the mappings between the maize samples (60) and the PO terms (~52).  ''''MS sent us the mappings as a spreadsheet and we discussed it on the POC conference call 8-2-11.''

@@ Line 31: / Line 31: @@
 ''PO wanted to have the comments from the Maize Atlas viewable by users. MaizeGDB has a page for each tissue, which includes these comments and more. We need to figure out how to link annotations to those pages, because normally annotation only links to the gene page from each data base. Maybe we should add them as xrefs to the corresponding PO terms?''
 ''Here is the link to their tissue pages: [[http://www.maizegdb.org/cgi-bin/termdoclist.cgi?ref=9021423&type=32466 Maize Developmental Gene Atlas]]''
 ''There is a page for each tissue, for example: [[http://www.maizegdb.org/cgi-bin/termrefs.cgi?id=2366347 anthers R1 B73]], with links to the PO terms and photos''
 =Questions=

@@ Line 36: / Line 36: @@
 ''Here is the link to their tissue pages: [[http://www.maizegdb.org/cgi-bin/termdoclist.cgi?ref=9021423&type=32466 Maize Developmental Gene Atlas]]''
-''There is a page for each tissue, for example: [[http://www.maizegdb.org/cgi-bin/termrefs.cgi?id=2366347 anthers R1 B73]], with links tot eh PO terms and photos''
+''There is a page for each tissue, for example: [[http://www.maizegdb.org/cgi-bin/termrefs.cgi?id=2366347 anthers R1 B73]], with links to the PO terms and photos''
 =Questions=

← Older revision	Revision as of 21:14, 11 April 2012
(No difference)

← Older revision		Revision as of 22:29, 5 August 2011
Line 33:		Line 33:

	''PO should go through the tissue pages and make sure the references to PO terms are correct.''		''PO should go through the tissue pages and make sure the references to PO terms are correct.''
		+
		+	''Here is the link to their tissue pages: [[http://www.maizegdb.org/cgi-bin/termdoclist.cgi?ref=9021423&type=32466 Maize Developmental Gene Atlas]]''
		+
		+	''There is a page for each tissue, for example: [[http://www.maizegdb.org/cgi-bin/termrefs.cgi?id=2366347 anthers R1 B73]], with links tot eh PO terms and photos''

	=Questions=		=Questions=

@@ Line 104: / Line 104: @@
 =Plan of action:=
 * Mary will work with JE to get SVN access set up, ''done''
 *PO will review the mappings between the maize samples (60) and the PO terms (~52).  ''''MS sent us the mappings as a spreadsheet and we discussed it on the POC conference call 8-2-11.''
 ''RW: Three tissues (leaf 1st with sheath V3 B73, leaf 8th V9 B73, and leaf expanding V3 B73) should have annotations on PO:0009025 vascular leaf instead of PO:0025034 leaf.''
@@ Line 130: / Line 133: @@
 ''This is perfectly valid, but as described above, putting the annotation on the more general term means that it will not get passed up to the specific type of flower or inflorescence.''
 * Mary will upload a small file first, (perhaps the annotations to the structure terms first?) and then upload the larger file.

@@ Line 97: / Line 97: @@
 *MIN values over the dataset are:5.58, 5.36, 5.1 respectively
 *Max values 14.91, 15.85 and 12.86, respectively
 =Plan of action:=

← Older revision		Revision as of 19:36, 4 August 2011
Line 29:		Line 29:

	* Note, the links to PO from each of the Atlas tissues are mostly not yet in production; most of my finalizing of the annotations was done after July 1.		* Note, the links to PO from each of the Atlas tissues are mostly not yet in production; most of my finalizing of the annotations was done after July 1.
		+
		+	''PO wanted to have the comments from the Maize Atlas viewable by users. MaizeGDB has a page for each tissue, which includes these comments and more. We need to figure out how to link annotations to those pages, because normally annotation only links to the gene page from each data base. Maybe we should add them as xrefs to the corresponding PO terms?''
		+
		+	''PO should go through the tissue pages and make sure the references to PO terms are correct.''

	=Questions=		=Questions=