Goal 1. Anatomical Entities - Revision history

Rwalls: /* 2. Develop list of anatomy/morphology terms that are missing */

2012-05-01T15:18:13Z

2. Develop list of anatomy/morphology terms that are missing

Rwalls at 15:14, 14 February 2012

2012-02-14T15:14:06Z

Rwalls: /* Terms for PO: */

2012-02-14T14:55:58Z

Terms for PO:

Rwalls: /* tracheary elements */

2012-02-14T14:54:07Z

tracheary elements

Rwalls: /* 3. Work on definitions of new terms */

2012-02-09T17:51:25Z

3. Work on definitions of new terms

Rwalls: /* other suggestions */

2012-02-09T17:51:09Z

other suggestions

Rwalls: /* Terms for GO: */

2012-02-07T15:34:13Z

Terms for GO:

Rwalls: /* Terms for GO: */

2012-02-07T15:33:13Z

Terms for GO:

Rwalls: /* other suggestions */

2012-02-07T15:04:49Z

other suggestions

Rwalls: /* wood related term suggestions */

2012-02-05T23:27:30Z

wood related term suggestions

@@ Line 90: / Line 90: @@
 =2. Develop list of anatomy/morphology terms that are missing=
 Do we need only wood-related terms, or other terms for woody plants?
 ==wood related term suggestions==

@@ Line 5: / Line 5: @@
 ===tracheary elements===
 *tracheary element (PO:0000290)
-*tracheid (PO:0000301)
+*tracheid (PO:0000301) ''need to make it clearer that a perforation is a specific anatomical entity, not just some random hole.
 *vessel member (PO:0002003) ''vessel element should be primary name and vessel segment should be a related, not exact, synonym''
@@ Line 30: / Line 30: @@
 ===initial cells (PO:0004011)===
 *cambial initial
-*fusiform initial (PO:0000079) (syn.: xylem initial, xylem mother cell)
+*fusiform initial (PO:0000079) (syn.: xylem initial, xylem mother cell) ''Need to work on this term. May be better as synonym of cambial initial. Xylem mother cell should not be  a synonym, but should be a separate term.''
 *ray initial (PO:0000082)
 *phloem mother cell (PO:0000400)
@@ Line 37: / Line 37: @@
 *axial wood parenchyma cell (PO:0004526)
 *ray wood parenchyma cell(PO:0004527)
-*procumbent ray wood parenchyma cell (PO:0004529)
+*procumbent ray wood parenchyma cell (PO:0004529) ''add synonym: procumbent cell''
-*upright ray wood parenchyma cell (PO:0004528)
+*upright ray wood parenchyma cell (PO:0004528) ''add synonym: upright cell''
 *sheath cell (PO:0004531)
 *tile cell (PO:0004530)
@@ Line 54: / Line 54: @@
 *metaxylem (PO:0000372)
-*secondary xylem (PO:0005848)
+*secondary xylem (PO:0005848) ''add comments that ducts are part of secondary xylem''
 *heartwood (PO:0004512)
-*sapwood (PO:0004513)
+*sapwood (PO:0004513) ''add comment that both conduction and storage take place here''
-*growth ring (PO:0004514)
+*growth ring (PO:0004514) ''add annual ring as narrow synonym''
 *early wood (PO:0004515)
 *late wood (PO:0004516)
@@ Line 71: / Line 71: @@
 *internal phloem (PO:0006216)
-*secondary phloem (PO:0005043)
+*secondary phloem (PO:0005043) ''also, inner bark. See paper by Junika 87''
 *included phloem (PO:0004524)
@@ Line 79: / Line 79: @@
 ===lateral meristem (PO:0020145)===
-*cambium (PO:0005597)
+*cambium (PO:0005597) ''should specifically refer to a ring of initials (actually, it does this, because it talks about a single layer of cells). Also add  term for cambial zone, as a cardinal organ part, because it is not always clear which cells are the initials and there is a gradient of differentiation.''
 *cork cambium (PO:0005599)
 *vascular cambium (PO:0005598)
@@ Line 94: / Line 94: @@
 ===Terms for PO:===
-reaction wood
+reaction wood/tension wood/compression wood - review by Wilson and Archer
-tension wood
+aggregate ray (also maybe homogenous, heterogenous, uniseriate, multiseriate, fusiform rays)
-aggregate ray (also maybe homogenous, heterogenous, uniseriate, multiseriate, fusiform rays)
+storied cambium and ray
-storied cambium
+non-storied cambium and ray
-non-storied cambium and rays
+aggregate ray, homogenous or heterogeneous, uniseriate, multiseriate
 oil cell
@@ Line 120: / Line 118: @@
 interfascicular cambium
-vascular bundle types
+vascular bundle types - amphicentric, vasicentric, medulary
 inter- and intra-xylary phloem
@@ Line 141: / Line 139: @@
 breakdown ray area
 ===Terms for GO:===
@@ Line 165: / Line 171: @@
-pit membrane:
+pit membrane
 simple pit
@@ Line 175: / Line 180: @@
+cambial dormancy (or just add stage)
 ==other suggestions==

← Older revision		Revision as of 14:55, 14 February 2012
Line 134:		Line 134:
	square cell		square cell

		+	axial parenchyma strands
		+
		+	resin canal
		+
		+	pith flecks (maybe)
		+
		+	breakdown ray area

	===Terms for GO:===		===Terms for GO:===

@@ Line 6: / Line 6: @@
 *tracheary element (PO:0000290)
 *tracheid (PO:0000301)
-*vessel member (PO:0002003)
+*vessel member (PO:0002003) ''vessel element should be primary name and vessel segment should be a related, not exact, synonym''
 ===fiber cells===

← Older revision		Revision as of 17:51, 9 February 2012
Line 180:		Line 180:

	Terms for gum/latex/resin? Too broadly defined. Could look up specific definitions in ethnobotanical literature, but people may not use them consistently.		Terms for gum/latex/resin? Too broadly defined. Could look up specific definitions in ethnobotanical literature, but people may not use them consistently.
−
−	~~=3. Work on definitions of new terms=~~
−
−	~~''space for notes as we work''~~
−
−	~~link to Google doc~~

@@ Line 175: / Line 175: @@
 ==other suggestions==
-Add term xylem cell and phloem cell  -- XP of cell and part_of xylem of phloem
+Add term '''xylem cell''' and '''phloem cell'''  -- XP of cell and part_of xylem of phloem. Can't create terms for secondary xylem or secondary phloem cells, because most of the cell types can appear in both primary and secondary vascular tissue.
-link xylem cell to definition of pulp and paper
+Xylem cell should be linked to the definition of pulp and paper (useful for TO)
-gum/latex/resin - maybe too broadly defined
+Terms for gum/latex/resin? Too broadly defined. Could look up specific definitions in ethnobotanical literature, but people may not use them consistently.
 =3. Work on definitions of new terms=

← Older revision	Revision as of 15:34, 7 February 2012
Line 145:	Line 145:


	+	See good description in Eames, also see Esau.

@@ Line 141: / Line 141: @@
 casparian strip
-mineral inclusions: calcium oxalate, silica
+mineral inclusions: calcium oxalate, silica, druses
 ==other suggestions==

← Older revision		Revision as of 15:04, 7 February 2012
Line 144:		Line 144:

	==other suggestions==		==other suggestions==
		+	Add term xylem cell and phloem cell -- XP of cell and part_of xylem of phloem
		+
		+	link xylem cell to definition of pulp and paper
		+
		+	gum/latex/resin - maybe too broadly defined
		+
		+	need to look up specific definitions in ethnobotanical literature.
		+
		+	From IAWA list

	=3. Work on definitions of new terms=		=3. Work on definitions of new terms=