Annotation Association File Format - Revision history

Cooperl: /* 7. Evidence */

2013-09-30T21:02:57Z

7. Evidence

2012-12-26T22:28:10Z

6. DB:Reference

2012-12-26T22:27:56Z

6. DB:Reference

2012-03-22T13:31:27Z

6. DB:Reference

2012-03-22T13:27:44Z

File Format

2011-12-06T23:06:18Z

6. DB:Reference

2011-10-27T19:58:01Z

File Format

2011-10-06T21:33:47Z

16. Annotation_extension

2011-10-05T21:58:29Z

File Name

2011-10-03T18:39:04Z

16. Annotation_extension

@@ Line 148: / Line 148: @@
 ===7. Evidence===
 *One of IMP, IGI, IPI, IAGP, ISS, IDA, IEP, IEA, TAS, NAS, ND, IC, RCA.
-*This field is mandatory, cardinality 1.
+* One of IMP, IGI, IPI, IAGP, ISS, IDA, IEP, IEA, TAS, NAS, ND, IC, RCA.
 ===8. With (or) From===

@@ Line 141: / Line 141: @@
 ===6. DB:Reference===
 *The unique identifier appropriate to DB for the authority for the attribution of the POid to the DB_Object_ID. This may be a literature reference or a database record. The syntax is DB:accession_number..
-*Note that only one reference can be cited on a single line. If a reference has identifiers in more than one database, multiple identifiers can be included on a single line, seaprated by a pipe character.
+*Note that only one reference can be cited on a single line. If a reference has identifiers in more than one database, multiple identifiers can be included on a single line, separated by a pipe character.
 * For example, if the reference is a published paper that has a PubMed ID, we strongly recommend that the PubMed ID be included, as well as an identifier within a model organism database.
 *Note: with the current version of the AmiGO browser code, it is impossible to have multiple references for a single association.  Whichever one is '''last''' in column 6 in the assoc file will be displayed

@@ Line 145: / Line 145: @@
 *Note: with the current version of the AmiGO browser code, it is impossible to have multiple references for a single association.  Whichever one is '''last''' in column 6 in the assoc file will be displayed
-*This field is mandatory, cardinality 1, >1; for cardinality >1 use a pipe to separate entries (e.g. GR:8789|PMID:2676709).
+*This field is mandatory, cardinality 1, >1; for cardinality >1 use a pipe to separate entries (e.g. GR:8789|PMID:2676709). But only the last 1 will be displayed.
 ===7. Evidence===

@@ Line 143: / Line 143: @@
 *Note that only one reference can be cited on a single line. If a reference has identifiers in more than one database, multiple identifiers can be included on a single line, seaprated by a pipe character.
 * For example, if the reference is a published paper that has a PubMed ID, we strongly recommend that the PubMed ID be included, as well as an identifier within a model organism database.
-*NOte: with the current version of the AmiGO browser code, it is impossible to have multiple references for a single association.  Whichever one is '''last''' in column 6 in the assoc file will be displayed
+*Note: with the current version of the AmiGO browser code, it is impossible to have multiple references for a single association.  Whichever one is '''last''' in column 6 in the assoc file will be displayed
 *This field is mandatory, cardinality 1, >1; for cardinality >1 use a pipe to separate entries (e.g. GR:8789|PMID:2676709).

@@ Line 40: / Line 40: @@
 | 2. *
 | DB_Object_ID
-| GR:0060905
+| 0060905
 |- align="left" valign="middle"
 | 3. *

@@ Line 48: / Line 48: @@
 | 4.
 | Qualifier
 |- align="left" valign="middle"
 | 5. *
@@ Line 63: / Line 64: @@
 | 8.
 | With (or) From
 |- align="left" valign="middle"
 | 9. *

@@ Line 211: / Line 211: @@
 *See additional information and discussion on the [[PO Annotation Extensions (column 16)]] page.
 *see also [https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budHRqaklJcmJxRjlaVnV6UGlyd0xWbHc&hl=en_US Google docs spread sheet] with specific suggestions of what terms and relations to put in column 16.
 ===17. Gene Product Form ID===

@@ Line 9: / Line 9: @@
 '''objecttype:''' ''gene/mutant/germplasm/qtl'' etc.<br />
 '''organism:''' is always GENUS e.g. ''arabidopsis/oryza/zea''.<br />
-'''organization:''' the isntitute/project which is contributing the association files.<br />
+'''organization:''' the institute/project which is contributing the association files.<br />
 For example:<br />