Cooperl: /* New children of anatomy and morphology related trait (TO:0000017) */

2012-04-20T05:16:13Z

New children of anatomy and morphology related trait (TO:0000017)

Cooperl: Created page with '==[https://sourceforge.net/tracker/?func=detail&aid=3519672&group_id=76834&atid=835557 anatomy and morphology related trait (TO:0000017)]== current def'n: This category belongs t…'

2012-04-20T05:15:04Z

Created page with '==[https://sourceforge.net/tracker/?func=detail&aid=3519672&group_id=76834&atid=835557 anatomy and morphology related trait (TO:0000017)]== current def'n: This category belongs t…'

New page

==[https://sourceforge.net/tracker/?func=detail&aid=3519672&group_id=76834&atid=835557 anatomy and morphology related trait (TO:0000017)]==
current def'n: This category belongs to traits associated with changes in the anatomy or structure of the plant at organ, tissue or cellular level.

proposed def'n: A plant trait (TO:0000387) which is associated with the anatomy or morphology of a plant anatomical entity (PO:0000003) or one or more constituent cellular components (GO:0005575) contained therein.

comment: Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010) as well as those of plant anatomical spaces (PO:0025117), portions of plant substance (PO:0025161).

''note: The PO ids in the comments do not go into the Dbxrefs''

===[https://sourceforge.net/tracker/?func=detail&aid=3519674&group_id=76834&atid=835557 New children of anatomy and morphology related trait (TO:0000017)]===
This is a valid hierarchy based on the Plant Ontology and will provide a parent for the potato tuber terms requested below.

*new child term and def'n: '''plant organ trait''' (TO:0000736): An anatomy and morphology trait (TO:0000017) which is associated with a plant organ (PO:0009008).

*new term and def'n: '''plant axis anatomy and morphology trait''' (TO:0000738): plant organ anatomy and morphology trait (TO:0000736) which is associated a plant axis (PO:0025004).

*new child term and def'n: '''shoot axis anatomy and morphology trait''' (TO:0000739): A plant axis trait (TO:0000738) which is associated with a shoot axis (PO:0025029).

*new term and def'n: '''branch anatomy and morphology trait''' (TO:0000740): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a branch (PO:0025073).

*new term and def'n: '''tuber anatomy and morphology trait ''' (TO:0000741): A branch anatomy and morphology trait (TO:0000740) which is associated with a tuber (PO:0004543).

*new term and def'n: '''subterranean tuber anatomy and morphology trait ''' (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).

← Older revision		Revision as of 05:16, 20 April 2012
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	*new term and def'n: '''subterranean tuber anatomy and morphology trait ''' (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).		*new term and def'n: '''subterranean tuber anatomy and morphology trait ''' (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
		+
		+	==[https://sourceforge.net/tracker/?func=detail&aid=3487511&group_id=76834&atid=835557 tuber traits]==
		+
		+	Terms requested by Syngenta (in bold):
		+
		+	'''tuber''' (PO:0004543): An enlarged storage branch (PO:0025073)
		+
		+	probably should be: subterranean tuber (PO:0004547): A tuber (PO:0004543) that is below ground
		+
		+	'''tuber epidermis''' (PO:0025046): A portion of shoot axis epidermis that is part of a tuber (PO:0004543).
		+
		+	probably should be: subterranean tuber epidermis (PO:0025048): A tuber epidermis (PO:0025046) that is part of a subterranean tuber (PO:0004547).
		+
		+	tuber axillary vegetative bud (PO:0025040): An axillary vegetative bud (PO:0004712) that is part of a tuber (PO:0004543). related synonym: '''tuber eye'''
		+
		+	probably should be: subterranean tuber axillary vegetative bud (PO:0025042): A tuber axillary vegetative bud (PO:0025040) that is part of a subterranean tuber (PO:0004547).
		+
		+	broad synonym:'''tuber eye'''
		+
		+	tuber storage parenchyma (PO:0025036): A portion of storage parenchyma (PO:0025035) that is part of a tuber (PO:0004543). exact synonym:'''tuber flesh'''
		+
		+	probably should be: subterranean tuber storage parenchyma (PO:0025038): A portion of tuber storage parenchyma (PO:0025036) that is part of a subterranean tuber (PO:0004547).
		+
		+	Narrow Synonym: '''potato tuber''' flesh
		+
		+
		+	===requested terms and suggested def'ns:===
		+
		+	tuber shape- The shape of the tuber
		+
		+	tuber size- The physical size of the tuber
		+
		+	tuber appearance- The overall appearance of the tuber. A 1-9 scale is used, with 1 the lowest score (very poor) and 9 the highest (excellent)
		+
		+	tuber mass- The mass of the tuber
		+
		+	[[File:Tuber.png]]
		+
		+	In the PO: A '''tuber''' is a '''branch''' which is a '''shoot axis'''; shoot axis is_a '''plant_axis'''; which is_a '''plant organ''' part_of the '''shoot system'''
		+
		+
		+	* '''tuber shape'''
		+	Proposed new term and def'n:
		+	'''subterranean tuber shape''' (TO:0000743): A subterranean tuber trait (TO:0000742) which is associated with the shape of a subterranean tuber (PO:0004547).
		+
		+	broad synonym: tuber shape
		+
		+	refer to PATO shape: PATO:0000052
		+
		+	* '''tuber size'''
		+	Proposed new term and def'n: '''subterranean tuber size''' (TO:0000744): A subterranean tuber trait (TO:0000742) which is associated with the size of a subterranean tuber (PO:0004547).
		+
		+	refer to PATO size: PATO:0000117
		+
		+	broad synonym: tuber size
		+
		+	* '''tuber appearance'''
		+	Proposed new term and def'n: '''subterranean tuber appearance''' (TO:0000745): A subterranean tuber trait (TO:0000742) which is associated with the appearance of a subterranean tuber (PO:0004547).
		+
		+	comment: A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent)
		+
		+	broad synonym: tuber appearance
		+
		+	No PATO reference for refer to appearance
		+
		+	* '''tuber mass'''
		+	Proposed new term and def'n: '''subterranean tuber mass''' (TO:0000746): A subterranean tuber trait (TO:0000742) which is associated with the mass of a subterranean tuber (PO:0004547).
		+
		+	broad synonym: tuber mass
		+
		+	refer to PATO mass: PATO:0000125

Anatomy and morphology related trait (TO:0000017) - Revision history

Cooperl: /* New children of anatomy and morphology related trait (TO:0000017) */

Cooperl: Created page with '==[https://sourceforge.net/tracker/?func=detail&aid=3519672&group_id=76834&atid=835557 anatomy and morphology related trait (TO:0000017)]== current def'n: This category belongs t…'