Agenda and Minutes 3-23-10 - Revision history

Cooperl at 17:58, 31 March 2010

2010-03-31T17:58:12Z

Cooperl at 16:09, 31 March 2010

2010-03-31T16:09:20Z

Rwalls at 13:52, 31 March 2010

2010-03-31T13:52:18Z

Rwalls at 13:51, 31 March 2010

2010-03-31T13:51:33Z

Rwalls: edited discussion of organ margin and leaf margin

2010-03-31T13:49:17Z

edited discussion of organ margin and leaf margin

Rwalls at 17:33, 29 March 2010

2010-03-29T17:33:49Z

Cooperl at 16:51, 29 March 2010

2010-03-29T16:51:33Z

Cooperl at 16:44, 29 March 2010

2010-03-29T16:44:21Z

Cooperl at 16:42, 29 March 2010

2010-03-29T16:42:27Z

Cooperl at 16:41, 29 March 2010

2010-03-29T16:41:29Z

@@ Line 14: / Line 14: @@
 They are currently siblings, common is_a children of plant structures.  Can one sibling term be a part_of another sibling???
-Comments: BS: I do not see anything wrong with this.
+Comments: BS, CM (by email): I do not see anything wrong with this.
 ''We agreed to make gametophyte and sporophyte part_of whole plant. Pankaj suggested that we might need additional terms 'gametophyte whole plant' and 'sporophyte whole plant' as children of gametophyte and sporophyte. We decided to try out the existing structure for while, and later add those terms if we need them.''

@@ Line 107: / Line 107: @@
 '''Proposed definition:''' Leaf margin: The margin of any flattened portion of a leaf.
-''Rather than changing leaf margin to leaf lamina margin (as proposed by RW on SourceForge), the current term 'leaf margin' should remain, and the synonym 'leaf lamina margin' should be removed. Instead, leaf margin should have part_of children 'leaf lamina margin' and 'petiole margin' (for flattened or marginal petioles).''
+''Rather than changing leaf margin to leaf lamina margin (as proposed by RW on SourceForge), the current term 'leaf margin' should remain, and the synonym 'leaf lamina margin' should be removed. Instead, leaf margin should have is_a children 'leaf lamina margin' and 'petiole margin' (for flattened or marginal petioles).''
 '''Proposed definition:''' Leaf lamina margin: The margin of a leaf lamina

← Older revision		Revision as of 13:52, 31 March 2010
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	''Dennis suggested that we should prioritize our discussion of terms so that we can deal first with the terms that people are most likely to need/use, then address little-used terms (like antiraphe) as time allows. We agreed this was a good idea.''		''Dennis suggested that we should prioritize our discussion of terms so that we can deal first with the terms that people are most likely to need/use, then address little-used terms (like antiraphe) as time allows. We agreed this was a good idea.''
		+

	''This week, we dealt with organ margin and leaf lamina margin.''		''This week, we dealt with organ margin and leaf lamina margin.''

@@ Line 104: / Line 104: @@
-'''Proposed definition:''' Leaf margin: The margin of any flattend portion of a leaf.
+'''Proposed definition:''' Leaf margin: The margin of any flattened portion of a leaf.
 ''Rather than changing leaf margin to leaf lamina margin (as proposed by RW on SourceForge), the current term 'leaf margin' should remain, and the synonym 'leaf lamina margin' should be removed. Instead, leaf margin should have part_of children 'leaf lamina margin' and 'petiole margin' (for flattened or marginal petioles).''
-'''Proposed definition:'''Leaf lamina margin: The margin of a leaf lamina
+'''Proposed definition:''' Leaf lamina margin: The margin of a leaf lamina
-'''Proposed definition:'''Petiole margin: The margin of a flattened petiole. Comment: only marginal or laminar petioles can have a margin.
+'''Proposed definition:''' Petiole margin: The margin of a flattened petiole. Comment: only marginal or laminar petioles can have a margin.
- ''We will need to add margins for all other laminar structures, probably most of the children of 'phyllome.' We already have sepal margin and petal margin.''
+''We will need to add margins for all other laminar structures, probably most of the children of 'phyllome.' We already have sepal margin and petal margin.''
 ''On a related note, petal and sepal should be children of phyllome.''

@@ Line 101: / Line 101: @@
 '''Proposed definition:''' Organ margin: The edge of an organ and the area immediately internally adjacent to it.
-''We discussed which organs can have margins, and agreed that it was only flattened or laminar organs or organ parts, since only they have an edge. The current term 'leaf margin' should remain, but the synonym 'leaf lamina margin' should be removed. Instead, leaf margin should have part_of children 'leaf lamina margin' and 'petiole margin' (for flattened or marginal petioles). We will need to add margins for all other laminar structures, probably most of the children of 'phyllome.' We already have sepal margin and petal margin.''
+''We discussed which organs can have margins, and agreed that it was only flattened or laminar organs or organ parts, since only they have an edge.''
 ''On a related note, petal and sepal should be children of phyllome.''

@@ Line 169: / Line 169: @@
 * '''International Botanical Congress (IBC2011)'''. July 23rd-30th 2011, Melbourne, Australia.  Important dates (http://www.ibc2011.com/Dates.htm): "Call of symposia closes" 3-31-10, Abstracts submission deadline: 12-1-10.
-''Dennis and Alejandra are planning to attend IBC2011. Dennis will work on possible symposium proposals. Pankaj can be co-organizer if necessary.  Need 4-6 speakers for the symposium.  Laurel is interested in going if funds are available''
+''Dennis and Alejandra are planning to attend IBC2011. Dennis will work on possible symposium proposals. Pankaj can be co-organizer if necessary.  Need 4-6 speakers for the symposium.  Laurel and Ramona are interested in going if funds are available''
 * '''Latin American Congress of Botany''' (LACB) (http://www.botanica-alb.org/X_Congreso/index.php). La Serena, Chile, October 4-10;  MAG: "I am not sure about due dates for this one due to the earthquake".

@@ Line 153: / Line 153: @@
 * '''American Society of Plant Biology (ASPB)''' July 31-Aug 4th 2010, Montreal, Quebec, Canada.  Laurel, Pankaj going, mini symposium presentation (hopefully) or poster and annotation workshop with Gramene.  Abstract submitted 3/12/10.
-''Laurel is looking into the possibility of hosting a booth with other database groups,for example SGN, TAIR. Gramene.  She is looking into costs and interest.  We should prepare a brochure to distribute, similar to the one Gramene has.''
+''Laurel is looking into the possibility of hosting a booth with other database groups, for example SGN, TAIR. Gramene.  She is looking into costs and interest.  We should prepare a brochure to distribute, similar to the one Gramene has.''
@@ Line 166: / Line 166: @@
 * '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010.  Boston, Mass.
 ''Laurel considering going, if there is useful information.''
 * '''International Botanical Congress (IBC2011)'''. July 23rd-30th 2011, Melbourne, Australia.  Important dates (http://www.ibc2011.com/Dates.htm): "Call of symposia closes" 3-31-10, Abstracts submission deadline: 12-1-10.
@@ Line 175: / Line 173: @@
 * '''Latin American Congress of Botany''' (LACB) (http://www.botanica-alb.org/X_Congreso/index.php). La Serena, Chile, October 4-10;  MAG: "I am not sure about due dates for this one due to the earthquake".
-Dennis is attending LACB. We will consider having a presentation at this meeting. Alejandra will not be able to attend.''
+''Dennis is attending LACB. We will consider having a presentation at this meeting. Alejandra will not be able to attend.''
 *Annotation workshops to be held at NYBG and Corvallis.  Dates need to be discussed.  Ramona will be visiting in Corvallis around the end of June.

← Older revision		Revision as of 16:44, 29 March 2010
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	''Lol and Ramona will prepare a short paper for submission to to Bio-Ontologies meeting''.		''Lol and Ramona will prepare a short paper for submission to to Bio-Ontologies meeting''.

−	* '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010. Boston, Mass. Laurel going ~~(?)~~.	+	* '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010. Boston, Mass.
		+	''Laurel considering going, if there is useful information.''

@@ Line 157: / Line 157: @@
 *'''Botanical Society of America (BSA)'''- July 31-Aug 4th 2010.  Providence, Rhode Island. Ramona, Dennis going (?), 12 minute oral presentation, '''Abstract submission deadline 4/1/10'''.
 *'''Bio-Ontologies 2010''': Semantic Applications in Life Sciences. July 9th and 10th, 2010, Boston, Mass. Satellite Interest Group (SIG) meeting preceding the International Society for Computational Biology (ISCB). Laurel, Ramona going (?). '''Abstract/short paper submission deadline 4/15/10'''.
+''Lol and Ramona will prepare a short paper for submission to to Bio-Ontologies meeting''.
 * '''International Society for Computational Biology (ISCB)'''. July 10th-13th, 2010.  Boston, Mass.  Laurel going (?).
@@ Line 168: / Line 170: @@
 * '''International Botanical Congress (IBC2011)'''. July 23rd-30th 2011, Melbourne, Australia.  Important dates (http://www.ibc2011.com/Dates.htm): "Call of symposia closes" 3-31-10, Abstracts submission deadline: 12-1-10.
 * '''Latin American Congress of Botany''' (LACB) (http://www.botanica-alb.org/X_Congreso/index.php). La Serena, Chile, October 4-10;  MAG: "I am not sure about due dates for this one due to the earthquake".
 *Annotation workshops to be held at NYBG and Corvallis.  Dates need to be discussed.  Ramona will be visiting in Corvallis around the end of June.
 ''We discussed possibly having an annotation workshop and/or POC meeting in Corvallis in late June/July. Ramona will be in Portland June 26-29 for the Evolution meetings, so we could have the meeting one of those days, or on the 30th (depending on the date that Ramona's talk is scheduled). Dennis may be able to come at that time. Have to check with others.
-We also discussed having a half-day annotation workshop at the NYBG in the fall. At that time, we could also invite experts from different taxa to comment/advise on the latest version of the PO. ''
+We also discussed having a half-day annotation workshop at the NYBG in the fall. At that time, we could also invite experts from different taxa to comment/advise on the latest version of the PO.''
 ''Pankaj suggested posting abstracts on the PO wiki. Ramona and Lol will add these to the Outreach page.''