ABRC - Revision history

Cooperl at 21:29, 29 November 2012

2012-11-29T21:29:46Z

2012-11-29T21:29:04Z

2012-11-29T21:17:25Z

2012-11-29T21:09:35Z

2012-11-29T21:09:12Z

2012-11-29T21:06:19Z

2012-11-29T21:01:40Z

2012-11-29T21:01:06Z

2012-11-29T20:06:03Z

2012-11-29T19:51:51Z

@@ Line 25: / Line 25: @@
 Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"
+[http://arabidopsis.info/bioinformatics/Ontology_details.html Ontologies at NASC]:
 [[Category:Collaborations]]

← Older revision		Revision as of 21:29, 29 November 2012
Line 25:		Line 25:
	Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"		Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"

−	[http://arabidopsis.info/bioinformatics/Ontology_details.html Ontologies at NASC]:	+	[http://arabidopsis.info/bioinformatics/Ontology_details.html Ontologies at NASC]: Needs to be updated

← Older revision		Revision as of 21:17, 29 November 2012
Line 22:		Line 22:


−	Question from JB (by email, 11-10-09) : "I would like to know what your view on the current status of controlled vocabulary is. What do you think about NASC current POs and PATOs (http://arabidopsis.info/bioinformatics/Ontology_details.html)?	+	Question from JB (by email, 11-10-09): "I would like to know what your view on the current status of controlled vocabulary is. What do you think about NASC current POs and PATOs (http://arabidopsis.info/bioinformatics/Ontology_details.html)?
	Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"		Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"

@@ Line 24: / Line 24: @@
 Question from JB (by email, 11-10-09) : "I would like to know what your view on the current status of controlled vocabulary is. What do you think about NASC current POs and PATOs (http://arabidopsis.info/bioinformatics/Ontology_details.html)?
 Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"
 [http://arabidopsis.info/cgi-bin/ontology/nasc_po/go.cgi?action=plus_node&depth=1&search_constraint=terms&query=PO:0009011&session_id=8730b1287179734 Ontology browser at NASC]

← Older revision	Revision as of 21:09, 29 November 2012
Line 22:	Line 22:


−	+	Question from JB (by email, 11-10-09) : "I would like to know what your view on the current status of controlled vocabulary is. What do you think about NASC current POs and PATOs (http://arabidopsis.info/bioinformatics/Ontology_details.html)?
	+	Do you think we can build on that? What would you expect from ABRC as an input and what could you provide as an output?"

← Older revision		Revision as of 21:06, 29 November 2012
Line 16:		Line 16:

	11-25-09: PJ asked CM about using [http://www.hindawi.com/journals/cfg/2004/805603/abs/ Obol]:		11-25-09: PJ asked CM about using [http://www.hindawi.com/journals/cfg/2004/805603/abs/ Obol]:
		+
		+	From CM in reference to the examples set: "Obol works best on controlled syntaxes; the first set would be easy and the second harder, but it could be extended."

	See: Mungall CJ (2004) Obol: Integrating Language and Meaning in Bio-Ontologies. Comparative and Functional Genomics 5: 509–520		See: Mungall CJ (2004) Obol: Integrating Language and Meaning in Bio-Ontologies. Comparative and Functional Genomics 5: 509–520

@@ Line 2: / Line 2: @@
 The ABRC collects, preserves, reproduces and distributes diverse seed and other stocks of ''Arabidopsis thaliana'' and related species.
 Contact:  Jelena Brkljacic (brkljacic.1@osu.edu)
@@ Line 18: / Line 20: @@
-Search for [http://www.arabidopsis.org/servlets/Search?action=new_search&type=germplasm germplasm]

@@ Line 1: / Line 1: @@
 '''Arabidopsis Biological Resource Center [http://abrc.osu.edu/ ABRC homepage]'''
-The ABRC collects, preserves, reproduces and distributes diverse seed and other stocks of Arabidopsis thaliana and related species.
+The ABRC collects, preserves, reproduces and distributes diverse seed and other stocks of ''Arabidopsis thaliana'' and related species.
 Contact:  Jelena Brkljacic (brkljacic.1@osu.edu)

← Older revision	Revision as of 20:06, 29 November 2012
Line 18:	Line 18:


−	+	Search for [http://www.arabidopsis.org/servlets/Search?action=new_search&type=germplasm germplasm]

@@ Line 5: / Line 5: @@
 Contact:  Jelena Brkljacic (brkljacic.1@osu.edu)
-Background: We received a list of of ABRC stocks with associated phenotypes, by email, from JB (ABRC Phenotypes for Pankaj (JB 8-24-11).xlsx).
+Background: We received a list of of ABRC stocks with associated phenotypes, by email, from JB (ABRC Phenotypes for Pankaj (JB 8-24-11).xlsx). From JB: "They are all single mutants; 15 have a term "leaf" within their phenotype; 13 have a term "flower"; 18 have "root"; 12 "seed" and 9 "seedling".
 Created Dropbox folder: ABRC Phenotype annotations
-From JB: "They are all single mutants; 15 have a term "leaf" within their phenotype; 13 have a term "flower"; 18 have "root"; 12 "seed" and 9 "seedling".
+Goal: a collaboration with ABRC on annotating their phenotype descriptors with PO, PATO and TO.