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New children of anatomy and morphology trait (TO:0000017)

plant structure anatomy and morphology trait:

shoot system anatomy and morphology trait (TO:0000077) and new child terms:

bud anatomy and mophology trait (TO:0000789):A shoot system anatomy and morphology trait (TO:0000077) which is associated with a bud (PO:0000055).
- axillary bud anatomy and morphology trait (TO:0000790): A bud anatomy and morphology trait (TO:0000789) which is associated with an axillary bud (PO:0004709).
  - axillary bud size (TO:0000791): An axillary bud anatomy and morphology trait (TO:0000790) which is associated with the size of an axillary bud (PO:0004709). Refer to PATO:0000117
  - axillary bud number (TO:0000792): An axillary bud anatomy and morphology trait (TO:0000790) which is associated with the number of axillary buds (PO:0004709) on a stalk or stem. Refer to number PATO:0001056
  - axillary bud shape (TO:0000793): An axillary bud anatomy and morphology trait (TO:0000790) which is associated with the shape of an axillary bud (PO:0004709). Refer to shape PATO:0000052
  - axillary bud prominence (TO:0000794): An axillary bud anatomy and morphology trait (TO:0000790) which is associated with the prominence of an axillary bud (PO:0004709). Refer to prominent PATO:0014820
reproductive shoot system anatomy and morphology trait (TO:0000786): A shoot system anatomy and morphology trait (TO:0000077) that is associated with an reproductive shoot system (PO:0025082).
- inflorescence anatomy and morphology trait (TO:0000373): A reproductive shoot system anatomy and morphology trait (TO:0000786) that is associated with an inflorescence (PO:0009049).
  - inflorescence branching (TO:0000050): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the extent of branching usually sets the tone for shape and compactness of the inflorescence (PO:0009049).
    - inflorescence branch arrangement (TO:0002751): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the arrangement of inflorescence branches (PO:0009081).
  - inflorescence color (TO:0000581): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the color of an inflorescence (PO:0009049).
  - inflorescence exsertion (TO:0001002): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the exsertion of an inflorescence (PO:0009049).
  - inflorescence height (TO:0000682): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the height of an inflorescence (PO:0009049) measured from ground to the attachment point.
  - inflorescence number (TO:0000582): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the average number of inflorescence (PO:0009049) per plant in a study.
  - inflorescence shape (TO:0000268): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the shape of an inflorescence (PO:0009049).
  - inflorescence size (TO:0006031): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the variation in size of inflorescence (PO:0009049).
  - inflorescence type (TO:0000267): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the variation in the type of inflorescence, wither due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049).

- - panicle anatomy and morphology trait (TO:0000847): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with a panicle.
    - panicle base to lowest branch (TO:0000545): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the length of the region between the panicle base to the lowest (the first) primary panicle branch.
    - panicle compactness and shape (TO:0020001): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the compactness and shape of a panicle.
    - panicle threshability (TO:0000406): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle.

- - spikelet anatomy and morphology trait (TO:0000657): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with changes in the anatomy or structure of the spikelet (PO:0009051) and its parts.

- - flower anatomy and morphology trait (TO:0000499): An inflorescence anatomy and morphology trait (TO:0000373) which is associated with a flower (PO:0009046).
    - flower shape (TO:0000859): A flower anatomy and morphology trait (TO:0000499) which is associated with the shape of a flower (PO:0009046). Refer to shape (PATO:0000052)
    - floret anatomy and morphology trait (TO:0000274): A flower anatomy and morphology trait (TO:0000499) which is associated with changes in the anatomy or structure of the grass floret and its parts.

- - tassel inflorescence anatomy and morphology trait (TO:0000788): An inflorescence anatomy and morphology trait (TO:0000373) that is associated with a tassel inflorescence (PO:0020126).
    - tassel inflorescence color (TO:0000795): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the color of a tassel inflorescence (PO:0020126). Refer to color PATO:0000014
    - tassel inflorescence circumference (TO:0000796): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the circumference of a tassel inflorescence (PO:0020126). Refer to circumference PATO:0001684
    - tassel inflorescence height (TO:0000797): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the height of a tassel inflorescence (PO:0020126). Refer to height PATO:0000119
    - tassel inflorescence length (TO:0000798): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the length of a tassel inflorescence (PO:0020126). Refer to length PATO:0000122
    - tassel inflorescence diameter (TO:0000799): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the diameter of a tassel inflorescence (PO:0020126). Refer to diameter PATO:0001334
    - tassel inflorescence type (TO:0000814): A tassel inflorescence anatomy and morphology trait (TO:0000788) which is associated with the type of tassel inflorescence (PO:0020126).

Plant organ anatomy and morphology trait (TO:0000736) and child terms

plant organ anatomy and morphology trait (TO:0000736): An anatomy and morphology trait (TO:0000017) which is associated with a plant organ (PO:0009008).

plant axis anatomy and morphology trait (TO:0000738): plant organ anatomy and morphology trait (TO:0000736) which is associated a plant axis (PO:0025004).

- shoot axis anatomy and morphology trait (TO:0000739): A plant axis trait (TO:0000738) which is associated with a shoot axis (PO:0025029).

- - inflorescence axis anatomy and morphology trait (TO:0000782):A shoot axis anatomy and morphology trait (TO:0000739) which is associated with an inflorescence axis (PO:0020122).

- - - inflorescence axis size (TO:0000783):An inflorescence anatomy and morphology trait (TO:0000782) which is associated with the size of an inflorescence axis (PO:0020122). Refer to size (PATO:0000117)

- - - inflorescence axis angle (TO:0000270): An inflorescence anatomy and morphology trait (TO:0000782) which is associated with the angle of the inflorescence axis (PO:0020122). Refer to angle (PATO:0002326)

- - - inflorescence axis texture (TO:0002754): An inflorescence anatomy and morphology trait (TO:0000782) which is associated with the texture of the inflorescence axis (PO:0020122). Refer to texture (PATO:0000150)

- - - inflorescence branch anatomy and morphology trait (TO:0000784):A inflorescence axis anatomy and morphology trait (TO:0000782) which is associated with an inflorescence branch (PO:0009081).
      - inflorescence primary branch anatomy and morphology trait (TO:0000846): An inflorescence branch anatomy and morphology trait (TO:0000784) which is associated with a second order inflorescence axis (PO:0006321).
        inflorescence primary branch length (TO:0000641): An inflorescence primary branch anatomy and morphology trait (TO:0000846) which is associated with the length of a second order inflorescence axis (PO:0006321).
        
        inflorescence primary branch attitude (TO:0011002): An inflorescence primary branch anatomy and morphology trait (TO:0000846) which is associated with the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters.

- - - - tassel branch anatomy and morphology trait (TO:0000785): An inflorescence branch anatomy and morphology trait (TO:0000784) which is associated with a tassel branch (PO:0006323).

- - - - tassel branch number (TO:0000813): A tassel branch anatomy and morphology trait (TO:0000785) which is associated with the number of tassel branches (PO:0006323).

- - - - tassel branch dry weight (TO:0000812): A tassel branch anatomy and morphology trait (TO:0000785) which is associated with the dry weight of a tassel branch (PO:0006323) prior to pollen shed.

- - peduncle anatomy and morphology trait (TO:0000776): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a peduncle (PO:0009053).

- - - peduncle waxiness (TO:0000777): A peduncle anatomy and morphology trait (TO:0000776) which is associated with a visual observation of the presence of cuticular wax (PO:0025386).

- - - peduncle length (TO:0002691): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the length of a peduncle (PO:0009053). Refer to length (PATO:0000122)

- - - peduncle width (TO:0000649): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the width of a peduncle (PO:0025386). Refer to width (PATO:0000921)

- - - peduncle top diameter (TO:0000546): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the diameter at the tip of the peduncle (PO:0009053). Refer to diameter (PATO:0001334)

- - - peduncle type (TO:0000778): A peduncle anatomy and morphology trait (TO:0000776) which is associate with the type of a peduncle (PO:0009053).

- - - peduncle attachment (TO:0000780): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the attachment quality of a peduncle (PO:0009053). Refer to attachment quality (PATO:0001435)

- - - peduncle color (TO:0000779): A peduncle anatomy and morphology trait (TO:0000776) which is associated with the color of a peduncle (PO:0009053). Refer to color (PATO:0000014)

- - branch anatomy and morphology trait (TO:0000740): A shoot axis anatomy and morphology trait (TO:0000739) which is associated with a branch (PO:0025073).

- - - tuber anatomy and morphology trait (TO:0000741): A branch anatomy and morphology trait (TO:0000740) which is associated with a tuber (PO:0004543).

- - - - subterranean tuber anatomy and morphology trait (TO:0000742): A tuber anatomy and morphology trait (TO:0000741) which is associated with a subterranean tuber (PO:0004547).
        subterranean tuber shape (TO:0000743): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the shape of a subterranean tuber (PO:0004547)
        
        subterranean tuber size (TO:0000744): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the size of a subterranean tuber (PO:0004547).
        
        subterranean tuber appearance (TO:0000745): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the appearance of a subterranean tuber (PO:0004547).
        
        subterranean tuber mass (TO:0000746): A subterranean tuber anatomy and morphology trait (TO:0000742) which is associated with the mass of a subterranean tuber (PO:0004547).

phyllome anatomy and morphology trait (TO:0000747): A plant organ anatomy and morphology trait (TO:0000736) which is associated with a phyllome (PO:0006001).
- leaf anatomy and morphology trait (TO:0000748): A phyllome anatomy and morphology trait (TO:0000747) which is associated with a leaf (PO:0025034).
  - vascular leaf anatomy and morphology trait (TO:0000419):A leaf anatomy and morphology trait (TO:0000748) which is associated with a vascular leaf (PO:0009025).
    - cotyledon anatomy and morphology trait (TO:0000749): A vascular leaf anatomy and morphology trait (TO:0000419) which is associated with a cotyledon (PO:0020030).
      - seedling cotyledon anatomy and morphology trait (TO:0000774): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with a seedling cotyledon (PO:0025471).
        seedling cotyledon color(TO:0000750): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the color of a seedling cotyledon(PO:0025471).
        
        seedling cotyledon number (TO:0000751): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the number of seedling cotyledons (PO:0025471).
        
        seedling cotyledon size (TO:0000752): A seedling cotyledon anatomy and morphology trait (TO:0000774) which is associated with the size of a seedling cotyledon(PO:0025471).
      - embryo cotyledon anatomy and morphology trait (TO:0000775): A cotyledon anatomy and morphology trait (TO:0000749) which is associated with an embryo cotyledon (PO:0025470).

coleoptile anatomy and morphology trait (TO:0000753) : A plant organ anatomy and morphology trait (TO:0000736) which is associated with a coleoptile (PO:0020033).
- coleoptile color (TO:0000244): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the color of a coleoptile (PO:0020033). refer to: color PATO:0000014
- coleoptile length (TO:0001007): A coleoptile anatomy and morphology trait (TO:0000753) which is associated with the length of a coleoptile (PO:0020033). refer to: length PATO:0000122

cardinal organ part (TO:0000754) and new child terms:

cardinal organ part anatomy and morphology trait (TO:0000754): An anatomy and morphology trait (TO:0000017) which is associated with a cardinal organ part (PO:0025001).
- shoot internode anatomy and morphology trait (TO:0000755): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a shoot internode (PO:0005005).
  - stem internode anatomy and morphology trait (TO:0000756): A shoot internode anatomy and morphology trait (TO:0000755) which is associated with a stem internode (PO:0020142).
    - hypocotyl anatomy and morphology trait (TO:0000757): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a hypocotyl (PO:0020100).
      - seedling hypocotyl anatomy and morphology trait (TO:0000769):A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with a seedling hypocotyl (PO:0025291).
        seedling hypocotyl size (TO:0000781): A seedling hypocotyl anatomy and morphology trait (TO:0000769) which is associated the size of a seedling hypocotyl (PO:0025291). Refer to size (PATO:0000117)
        
        seedling hypocotyl length (TO:0006065): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with the length of a hypocotyl (PO:0020100). Refer to length PATO:0000122
        
        seedling hypocotyl color (TO:0000759): A seedling hypocotyl anatomy and morphology trait (TO:0000769) which is associated with the color of a hypocotyl (PO:0020100). Refer to color PATO:0000014
        seedling hypocotyl green (TO:0000760): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320). Refer to: color (PATO:0000014); green (PATO:0000320)
        
        seedling hypocotyl green with bronze band (TO:0000761): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color green (PATO:0000320) with a bronze (PATO:0002363) band.
        
        seedling hypocotyl purple (TO:0000762): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color purple (PATO:0000951). Refer to: color (PATO:0000014); purple: PATO:0000951
        
        seedling hypocotyl dark purple (TO:0000763): A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the quality color dark purple (PATO:0001259). Refer to: color (PATO:0000014); dark purple: PATO:0001259
      - embryo hypocotyl anatomy and morphology trait (TO:0000771): A hypocotyl anatomy and morphology trait (TO:0000757) which is associated with an embryo hypocotyl (PO:0025290).
    - mesocotyl anatomy and morphology trait (TO:0000758): A stem internode anatomy and morphology trait (TO:0000756) which is associated with a mesocotyl (PO:0020037).
      - seedling mesocotyl anatomy and morphology trait (TO:0000772):A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with an seedling mesocotyl (PO:0025295).
      - embryo mesocotyl anatomy and morphology trait (TO:0000773): A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with an embryo mesocotyl (PO:0025294).
      - mesocotyl length (TO:0000544): A mesocotyl anatomy and morphology trait (TO:0000758) which is associated with the length of a mesocotyl (PO:0020037). Refer to length PATO:0000122

stalk anatomy and morphology trait (TO:0000764): A cardinal organ part anatomy and morphology trait (TO:0000754) which is associated with a stalk (PO:0025066).
- petiole anatomy and morphology trait (TO:0000765): A stalk anatomy and morphology trait (TO:0000764): which is associated with a petiole (PO:0020038).
  - petiole length (TO:0000766): A petiole anatomy and morphology trait (TO:0000765)that is associated with the length of a petiole (PO:0020038). Refer to length PATO:0000122
  - petiole shape(TO:0000767): A petiole anatomy and morphology trait (TO:0000765) that is associated with the shape of a petiole (PO:0020038). Refer to shape PATO:0000052
  - petiole size (TO:0000768): A petiole anatomy and morphology trait (TO:0000765) that is associated with the size of a petiole (PO:0020038). Refer to size PATO:0000117

plant cell anatomy and morphology traits:

multi-tissue plant structure anatomy and morphology traits

fruit anatomy and morphology trait (TO:0002629): A multi-tissue plant structure anatomy and morphology trait (TO:0000836) which is associated with a fruit (PO:0009001).
- fruit abscission zone size (TO:0002632): A fruit anatomy and morphology trait (TO:0002632) which is associated with the variation in the size of the fruit abscission zone (PO:0006503).
- fruit size (TO:0002625): A fruit anatomy and morphology trait (TO:0002629) which is associated with the variation in the size of a fruit (PO:0009001).
- fruit shape (TO:0002628): A fruit anatomy and morphology trait (TO:0002629) which is associated with the variation in the shape of a fruit (PO:0009001).
seed anatomy and morphology trait (TO:0000184): A multi-tissue plant structure anatomy and morphology trait (TO:0000836) which is associated with a seed (PO:0009010).
- seed size (TO:0000391): A seed anatomy and morphology trait (TO:0000184) which is associated with the size of a seed (PO:0009010).
- seed width (TO:0000149): A seed anatomy and morphology trait (TO:0000184) which is associated with the width of a seed (PO:0009010).
- seed length (TO:0000146): A seed anatomy and morphology trait (TO:0000184) which is associated with the length of a seed (PO:0009010).
- seed thickness (TO:0000304): A seed anatomy and morphology trait (TO:0000184) which is associated with the thickness of a seed (PO:0009010).
- seed color (TO:0000486): A seed anatomy and morphology trait (TO:0000184) which is associated with the color of a seed (PO:0009010).
- seed shape (TO:0000484): A seed anatomy and morphology trait (TO:0000184) which is associated with the shape of a seed (PO:0009010).
- seed weight (TO:0000181): A seed anatomy and morphology trait (TO:0000184) which is associated with the weight of a seed (PO:0009010).

seed color (TO:0000486): A seed anatomy and morphology trait (TO:0000184) which is associated with the color of a seed (PO:0009010).
seed shape (TO:0000484): A seed anatomy and morphology trait (TO:0000184) which is associated with the shape of a seed (PO:0009010).
seed texture (TO:0020016): A seed anatomy and morphology trait (TO:0000184) which is associated with the texture of a seed (PO:0009010).

embryo anatomy and morphology traits

New stature or vigor traits (TO:0000133) added:

plant aspect- made is_a stature or vigor trait (TO:0000133):

plant aspect: A stature or vigor trait (TO:0000133) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003).

New stress trait (TO:0000164) terms added:

bacterial blight disease resistance (TO:0000770): A bacterial disease resistance (TO:0000315) that resists bacterial blight disease.

Renamed and redefined terms:

root term: plant trait (TO:0000387)- removed "ontology from name, defined based on entities and "
anatomy and morphology trait (TO:0000017)- removed "related" from name and redefined.
shoot system anatomy and morphology trait (TO:0000077)- was shoot anatomy and morphology trait
mesocotyl length (TO:0000544): was a child of embryo development, embryo related trait and mesocotyl anatomy and morphology trait. Now is only a child of mesocotyl anatomy and morphology trait.
seedling hypocotyl anatomy and morphology trait (TO:0000769): new child of hypocotyl anatomy and morphology trait.

blast disease resistance:

Redefined terms:

plant color (TO:0000708): new def: A stature and vigor trait (TO:0000133) which is associated with the color of a whole plant (PO:0000003). Refer to color PATO:0000014.

plant height (TO:0000207): new def: A stature and vigor trait (To:0000133) which is associated with the height of a whole plant (PO:0000003). Refer to height PATO:0000119.

These are ones that kept their original names

Summary New TO Terms- Spring 2012

Contents

New children of anatomy and morphology trait (TO:0000017)

plant structure anatomy and morphology trait:

shoot system anatomy and morphology trait (TO:0000077) and new child terms:

Plant organ anatomy and morphology trait (TO:0000736) and child terms

cardinal organ part (TO:0000754) and new child terms:

plant cell anatomy and morphology traits:

multi-tissue plant structure anatomy and morphology traits

embryo anatomy and morphology traits

New stature or vigor traits (TO:0000133) added:

New stress trait (TO:0000164) terms added:

Renamed and redefined terms:

Redefined terms:

Added relations:

Obsoleted Terms

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