Difference between revisions of "Release 21"

From Plant Ontology Wiki
Jump to navigationJump to search
Line 19: Line 19:
 
* Term trackers Xrefs have have been converted from the old SourceForge ids to link out to the new GitHub Issue Tracker (https://github.com/Planteome/plant-ontology/issues)
 
* Term trackers Xrefs have have been converted from the old SourceForge ids to link out to the new GitHub Issue Tracker (https://github.com/Planteome/plant-ontology/issues)
  
==Revisions to the ''plant anatomical entity'' branch:==
+
==Major revisions to the ''plant anatomical entity'' branch:==
  
* A new child term of ''plant cell was added'': ''native plant cell'' to describe plant cells that are either part of a multicellular ''whole plant'' (PO:0000003) ''in vivo'', or a unicellular organism ''in natura'' (i.e. part of a natural environment).   
+
* After consultation with the GO Consortium, a new child term of ''plant cell'' was added''Native plant cell'' describes plant cells that are either part of a multicellular ''whole plant'' (PO:0000003) ''in vivo'', or a unicellular organism ''in natura'' (i.e. part of a natural environment).   
 
* This term is a sibling  to ''cultured plant cell'' which covers all the cells grown ''in vitro''.
 
* This term is a sibling  to ''cultured plant cell'' which covers all the cells grown ''in vitro''.
  

Revision as of 13:50, 2 October 2015

Back to Main_Page#PO_Releases_and_Database_Updates

Summary and Announcements

The latest release of the Plant Ontology, version #21, is available on our Plant Ontology Browser.

Changes to the Plant Ontology

  • This full release features the addition of 37 new PO terms, for both the Plant Anatomical Entity (PAE) (31) and Plant Structure Development Stage (PSDS) (6) branches of the ontology.
  • Names have been revised for 18 PAE terms and 23 PSDS terms.
  • Definitions of many more terms have also been revised and updated.
  • Includes all revisions of the plant_ontology.obo file from Aug 2013 (#2228) to July 2015 (#3502) on the PO SVN site.
  • This Release includes all the changes from Aug. 6th, 2015 #33ae100 to Sep 25, 2015 #01901fa

Major revisions to the plant anatomical entity branch:

  • After consultation with the GO Consortium, a new child term of plant cell was added. Native plant cell describes plant cells that are either part of a multicellular whole plant (PO:0000003) in vivo, or a unicellular organism in natura (i.e. part of a natural environment).
  • This term is a sibling to cultured plant cell which covers all the cells grown in vitro.

Revisions to the plant structure development stage branch:

For more details of the new and revised terms, please see: Details_of_Changes_to_Release_21

New and Revised Annotation Data

New relation added to order the stages

A new relation "precedes" was added to the Plant Ontology in order to order the plant structure development stages.

This was used in the revision of the plant embryo development stages, as shown below:

Precedes.png

You can find more details about the new 'precedes' relation on the Relations_in_the_Plant_Ontology wiki page.