Plant Pheontype Pilot Project 2015
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Association data developed from the Plant Phenotype Pilot Project paper published in Feb 2015: "An ontology approach to comparative phenomics in plants"
- Six plant species: Rice, Maize, Arabidopsis, soybean, Medicago, tomato
EQ files for this dataset can be found on the iPlant data store
From Oellrich et al.:
- The number of EQ statements, genes, genotypes, and phenotypes they were associated with, for six plant species
Species | #EQs
(phenes) |
#unique EQs -
all genotypes |
#genes | #genotypes | #phenotypes |
---|---|---|---|---|---|
Arabidopsis thaliana | 5172 | 1260 | 2393 | 2393* | 1385 |
Zea mays ssp mays | 373 | 180 | 114 | 169 | 117 |
Oryza sativa L. | 340 | 271 | 92 | 95 | 86 |
Solanum lycopersicum | 269 | 174 | 72 | 128 | 90 |
Medicago truncatula | 149 | 99 | 40 | 45 | 40 |
Glycene max | 61 | 39 | 30 | 30* | 24 |
Total | 6364 | 2023 | 2741 | 2866 | 1742 |
'#Genotypes equals # genes because no information on alleles was available for these species.
Oellrich et al. Plant Methods 2015 11:10 doi:10.1186/s13007-015-0053-y