Difference between revisions of "Links to sites using the PO"
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[http://www.genomeindia.org/biocuration/ Manually Curated Database of Rice Proteins]- tagged with TO terms | [http://www.genomeindia.org/biocuration/ Manually Curated Database of Rice Proteins]- tagged with TO terms | ||
| − | [http://www.metalife.com/index.html Metalife] | + | [http://www.metalife.com/index.html Metalife]- ???? |
[http://services.cbib.u-bordeaux2.fr/MERYB/vocabulary/ontology.php?section=2&sel=&expand=1&term_id=603&specie= Metabolomic Repository Bordeaux MeRy] | [http://services.cbib.u-bordeaux2.fr/MERYB/vocabulary/ontology.php?section=2&sel=&expand=1&term_id=603&specie= Metabolomic Repository Bordeaux MeRy] | ||
Revision as of 14:49, 28 August 2017
A to F
AgBase- only has annotations to GO
ARTADE2DB- link not working?
Biolod.org example page: non-secretory trichome see also: plant structure - link not working?
BRENDA- mostly uses BTO, but old version of PO, TO and EO are on it
Compositae Genomics Project: Morphdb
cosmoss- No PO on their site
G to L
Gene Ontology- No PO or TO?
Gramene- http://archive.gramene.org/plant_ontology/
Gramene Biomart- can filter by PO and GO
Cyverse- mirror site of planteome, otherwise not sure how it is being used otherwise
Live Plant Image Group- has links to browse PO, but not sure how it is used
M to P
MAGIC- Fu et al (2014) MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinformatics. doi: 10.1093/bioinformatics/btt739
- 'MAize Gene expressIon Compendium'. It is a web based interface for exploring and analyzing a comprehensive maize-specific cross-platform expression compendium. This compendium was constructed by collecting, homogenizing and formally annotating publicly available microarrays from Gene Expression Omnibus (GEO), and ArrayExpress.
- plant ontology annotations
MaizeGDB- cannot find any use of the PO or TO on their site...
Maize cell Genomics database- JCVI
Maize cell Genomics database- images tagged with PO ids http://maize.jcvi.org/cellgenomics/ecell.php?search=10
Manually Curated Database of Rice Proteins- tagged with TO terms
Metalife- ????
Metabolomic Repository Bordeaux MeRy
PO integration in MSI standards
PRIDE- In query, there are a list of parameter types to choose from. If you pick PO, you get a list of terms.
The Integrated Databases of Plant Omics Data
R to Z
Solanaceae Genome network (SGN)
SuperFamily - need to address some issues here, not an "Arabidopsis Plant Ontology".
Uniprot keywords ???
Others?
not actually using the PO but should be:
Bio-Array Resource for Plant Biology (BAR)
CRIBI and the Query page
