Difference between revisions of "Arabidopsis-boyes-stages"
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| align="center" style="background:#f0f0f0;"|'''Description''' | | align="center" style="background:#f0f0f0;"|'''Description''' | ||
| align="center" style="background:#f0f0f0;"|'''PO_ID''' | | align="center" style="background:#f0f0f0;"|'''PO_ID''' | ||
| − | | align="center" style="background:#f0f0f0;"|''' | + | | align="center" style="background:#f0f0f0;"|'''PO_TERM_NAME''' |
|- | |- | ||
| − | | 0|| ||Seed germination||PO:0007057||0 seed germination stage | + | |0 || ||'''Seed germination'''||PO:0007057||0 seed germination stage |
|- | |- | ||
| 0.1||3.0 (on plates)||Seed imbibition||PO:0007022||seed imbibition stage | | 0.1||3.0 (on plates)||Seed imbibition||PO:0007022||seed imbibition stage | ||
| Line 16: | Line 16: | ||
| 0.7||5.5 (on plates)||Hypocotyl and cotyledon emerge from seed coat||PO:0007043||hypocotyl emergence stage | | 0.7||5.5 (on plates)||Hypocotyl and cotyledon emerge from seed coat||PO:0007043||hypocotyl emergence stage | ||
|- | |- | ||
| − | | 1|| || | + | | 1|| ||'''Leaf development'''||PO:0007133||leaf production stage |
|- | |- | ||
| − | | 1||6.0 (on plates)||Cotyledons fully open||PO:0007049||cotyledon emergence stage | + | | 1.0 ||6.0 (on plates)||Cotyledons fully open||PO:0007049||cotyledon emergence stage |
|- | |- | ||
| 1.02||10.3 (on plates) 12.5||2 rosette leaves are greater than 1 mm in length||PO:0007098||LP.02 two leaves visible stage | | 1.02||10.3 (on plates) 12.5||2 rosette leaves are greater than 1 mm in length||PO:0007098||LP.02 two leaves visible stage | ||
| Line 46: | Line 46: | ||
| 1.14||25.5||14 rosette leaves are greater than 1mm||PO:0007085||LP.14 fourteen leaves visible stage | | 1.14||25.5||14 rosette leaves are greater than 1mm||PO:0007085||LP.14 fourteen leaves visible stage | ||
|- | |- | ||
| − | | 3|| ||Rosette Growth||PO:0007113||rosette growth stage | + | | 3|| ||'''Rosette Growth'''||PO:0007113||rosette growth stage |
|- | |- | ||
| 3.2||18.9||Rosette is 20% of final size||PO:0007081||early rosette growth stage | | 3.2||18.9||Rosette is 20% of final size||PO:0007081||early rosette growth stage | ||
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| 3.9||29.3||Rosette growth is complete||PO:0007078||rosette growth complete stage | | 3.9||29.3||Rosette growth is complete||PO:0007078||rosette growth complete stage | ||
|- | |- | ||
| − | | 5|| ||Inflorescence emergence||PO:0007041||inflorescence emergence stage | + | | 5|| ||'''Inflorescence emergence'''||PO:0007041||inflorescence emergence stage |
|- | |- | ||
| 5.1||26||First flower buds are visible in the rosette, plant has not yet bolted||PO:0007006||IL.00 inflorescence just visible stage | | 5.1||26||First flower buds are visible in the rosette, plant has not yet bolted||PO:0007006||IL.00 inflorescence just visible stage | ||
|- | |- | ||
| − | | 6|| ||Flower production||PO:0007016||whole plant flowering stage | + | | 6|| ||'''Flower production'''||PO:0007016||whole plant flowering stage |
|- | |- | ||
| 6||31.8||First flower is open, petals are at 90 degree angle to the pistil||PO:0007026||FL.00 first flower(s) open stage | | 6||31.8||First flower is open, petals are at 90 degree angle to the pistil||PO:0007026||FL.00 first flower(s) open stage | ||
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| 6.9||49.4||Flowering complete, flowers are no longer produced.||PO:0007024||FL.04 end of flowering stage | | 6.9||49.4||Flowering complete, flowers are no longer produced.||PO:0007024||FL.04 end of flowering stage | ||
|- | |- | ||
| − | | 8|| ||Silique | + | | 8|| ||'''Silique ripening''' Seed pods become brown and then shatter.||PO:0007010||whole plant fruit ripening stage |
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| − | | 8||48||First silique | + | | 8.0||48||First silique shattered||PO:0007050||late whole plant fruit ripening stage |
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| − | | 9|| || | + | | 9|| ||'''Senescence''' (Plant starts to lose pigment becoming brownish)||PO:0007017||sporophyte senescent stage |
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| − | | 9.7|| || | + | | 9.7|| ||Senescence complete; ready for seed harvest||PO:0007017||sporophyte senescent stage |
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Latest revision as of 15:10, 5 October 2017
Mapping of Arabidopsis growth stages defined by Boyes et al. vs Plant Ontology growth and development stages.
| Stage Number | Approx.number of days * | Description | PO_ID | PO_TERM_NAME |
| 0 | Seed germination | PO:0007057 | 0 seed germination stage | |
| 0.1 | 3.0 (on plates) | Seed imbibition | PO:0007022 | seed imbibition stage |
| 0.5 | 4.3 (on plates) | Radicle emerges from seed coat | PO:0007015 | radicle emergence stage |
| 0.7 | 5.5 (on plates) | Hypocotyl and cotyledon emerge from seed coat | PO:0007043 | hypocotyl emergence stage |
| 1 | Leaf development | PO:0007133 | leaf production stage | |
| 1.0 | 6.0 (on plates) | Cotyledons fully open | PO:0007049 | cotyledon emergence stage |
| 1.02 | 10.3 (on plates) 12.5 | 2 rosette leaves are greater than 1 mm in length | PO:0007098 | LP.02 two leaves visible stage |
| 1.03 | 14.4 (on plates) 15.9 | 3 rosette leaves are greater than 1 mm in length | PO:0007106 | LP.03 three leaves visible stage |
| 1.04 | 16.5 | 4 rosette leaves are greater than 1mm in length | PO:0007115 | LP.04 four leaves visible stage |
| 1.05 | 17.7 | 5 rosette leaves are greater than 1mm | PO:0007065 | LP.05 five leaves visible stage |
| 1.06 | 18.4 | 6 rosette leaves are greater than 1mm | PO:0007123 | LP.06 six leaves visible stage |
| 1.07 | 19.4 | 7 rosette leaves are greater than 1mm | PO:0007063 | LP.07 seven leaves visible stage |
| 1.08 | 20 | 8 rosette leaves are greater than 1mm | PO:0007095 | LP.08 eight leaves visible stage |
| 1.09 | 21.1 | 9 rosette leaves are greater than 1mm | PO:0007101 | LP.09 nine leaves visible stage |
| 1.1 | 21.6 | 10 rosette leaves are greater than 1mm | PO:0007103 | LP.10 ten leaves visible stage |
| 1.11 | 22.2 | 11 rosette leaves are greater than 1mm | PO:0007116 | LP.11 eleven leaves visible stage |
| 1.12 | 23.3 | 12 rosette leaves are greater than 1mm | PO:0007064 | LP.12 twelve leaves visible stage |
| 1.13 | 24.8 | 13 rosette leaves are greater than 1mm | PO:0007083 | LP.13 thirteen leaves visible stage |
| 1.14 | 25.5 | 14 rosette leaves are greater than 1mm | PO:0007085 | LP.14 fourteen leaves visible stage |
| 3 | Rosette Growth | PO:0007113 | rosette growth stage | |
| 3.2 | 18.9 | Rosette is 20% of final size | PO:0007081 | early rosette growth stage |
| 3.5 | 24 | Rosette is 50% final size | PO:0007068 | mid rosette growth stage |
| 3.7 | 27.4 | Rosette is 70% final size | PO:0007076 | late rosette growth stage |
| 3.9 | 29.3 | Rosette growth is complete | PO:0007078 | rosette growth complete stage |
| 5 | Inflorescence emergence | PO:0007041 | inflorescence emergence stage | |
| 5.1 | 26 | First flower buds are visible in the rosette, plant has not yet bolted | PO:0007006 | IL.00 inflorescence just visible stage |
| 6 | Flower production | PO:0007016 | whole plant flowering stage | |
| 6 | 31.8 | First flower is open, petals are at 90 degree angle to the pistil | PO:0007026 | FL.00 first flower(s) open stage |
| 6.1 | 35.9 | 10% flowers to be produced are open | PO:0007026 | FL.00 first flower(s) open stage |
| 6.3 | 40.1 | 30% flowers to be produced are open | PO:0007034 | FL.01 1/4 of flowers open stage |
| 6.5 | 43.5 | 50 % flowers to be produced are open | PO:0007053 | FL.02 1/2 of flowers open stage |
| 6.9 | 49.4 | Flowering complete, flowers are no longer produced. | PO:0007024 | FL.04 end of flowering stage |
| 8 | Silique ripening Seed pods become brown and then shatter. | PO:0007010 | whole plant fruit ripening stage | |
| 8.0 | 48 | First silique shattered | PO:0007050 | late whole plant fruit ripening stage |
| 9 | Senescence (Plant starts to lose pigment becoming brownish) | PO:0007017 | sporophyte senescent stage | |
| 9.7 | Senescence complete; ready for seed harvest | PO:0007017 | sporophyte senescent stage | |
