Difference between revisions of "Arabidopsis-boyes-stages"

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| align="center" style="background:#f0f0f0;"|'''PO_TERM_NAME'''
 
| align="center" style="background:#f0f0f0;"|'''PO_TERM_NAME'''
 
|-
 
|-
|'''0|| ||Seed germination||PO:0007057||0 seed germination stage'''
+
|0 || ||'''Seed germination'''||PO:0007057||0 seed germination stage
 
|-
 
|-
 
| 0.1||3.0 (on plates)||Seed imbibition||PO:0007022||seed imbibition stage
 
| 0.1||3.0 (on plates)||Seed imbibition||PO:0007022||seed imbibition stage
Line 16: Line 16:
 
| 0.7||5.5 (on plates)||Hypocotyl and cotyledon emerge from seed coat||PO:0007043||hypocotyl emergence stage
 
| 0.7||5.5 (on plates)||Hypocotyl and cotyledon emerge from seed coat||PO:0007043||hypocotyl emergence stage
 
|-
 
|-
| 1|| ||Leaf development||PO:0007133||leaf production stage
+
| 1|| ||'''Leaf development'''||PO:0007133||leaf production stage
 
|-
 
|-
| 1||6.0 (on plates)||Cotyledons fully open||PO:0007049||cotyledon emergence stage
+
| 1.0 ||6.0 (on plates)||Cotyledons fully open||PO:0007049||cotyledon emergence stage
 
|-
 
|-
 
| 1.02||10.3 (on plates) 12.5||2 rosette leaves are greater than 1 mm in length||PO:0007098||LP.02 two leaves visible stage
 
| 1.02||10.3 (on plates) 12.5||2 rosette leaves are greater than 1 mm in length||PO:0007098||LP.02 two leaves visible stage
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| 1.14||25.5||14 rosette leaves are greater than 1mm||PO:0007085||LP.14 fourteen leaves visible stage
 
| 1.14||25.5||14 rosette leaves are greater than 1mm||PO:0007085||LP.14 fourteen leaves visible stage
 
|-
 
|-
| 3|| ||Rosette Growth||PO:0007113||rosette growth stage
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| 3|| ||'''Rosette Growth'''||PO:0007113||rosette growth stage
 
|-
 
|-
 
| 3.2||18.9||Rosette is 20% of final size||PO:0007081||early rosette growth stage
 
| 3.2||18.9||Rosette is 20% of final size||PO:0007081||early rosette growth stage
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| 5.1||26||First flower buds are visible in the rosette, plant has not yet bolted||PO:0007006||IL.00 inflorescence just visible stage
 
| 5.1||26||First flower buds are visible in the rosette, plant has not yet bolted||PO:0007006||IL.00 inflorescence just visible stage
 
|-
 
|-
| 6|| ||Flower production||PO:0007016||whole plant flowering stage
+
| 6|| ||'''Flower production'''||PO:0007016||whole plant flowering stage
 
|-
 
|-
 
| 6||31.8||First flower is open, petals are at 90 degree angle to the pistil||PO:0007026||FL.00 first flower(s) open stage
 
| 6||31.8||First flower is open, petals are at 90 degree angle to the pistil||PO:0007026||FL.00 first flower(s) open stage
Line 72: Line 72:
 
| 6.9||49.4||Flowering complete, flowers are no longer produced.||PO:0007024||FL.04 end of flowering stage
 
| 6.9||49.4||Flowering complete, flowers are no longer produced.||PO:0007024||FL.04 end of flowering stage
 
|-
 
|-
| 8|| ||Silique or fruit ripening. Seed pods become brown and then shatter.||PO:0007010||whole plant fruit ripening stage
+
| 8|| ||'''Silique or fruit ripening. Seed pods become brown and then shatter.'''||PO:0007010||whole plant fruit ripening stage
 
|-
 
|-
 
| 8||48||First silique or seed pod shatters.||PO:0007036||beginning of whole plant fruit ripening stage
 
| 8||48||First silique or seed pod shatters.||PO:0007036||beginning of whole plant fruit ripening stage

Revision as of 19:56, 3 June 2014

Mapping of Arabidopsis growth stages defined by Boyes et al. vs Plant Ontology growth and development stages.

Stage Number Approx.number of days * Description PO_ID PO_TERM_NAME
0 Seed germination PO:0007057 0 seed germination stage
0.1 3.0 (on plates) Seed imbibition PO:0007022 seed imbibition stage
0.5 4.3 (on plates) Radicle emerges from seed coat PO:0007015 radicle emergence stage
0.7 5.5 (on plates) Hypocotyl and cotyledon emerge from seed coat PO:0007043 hypocotyl emergence stage
1 Leaf development PO:0007133 leaf production stage
1.0 6.0 (on plates) Cotyledons fully open PO:0007049 cotyledon emergence stage
1.02 10.3 (on plates) 12.5 2 rosette leaves are greater than 1 mm in length PO:0007098 LP.02 two leaves visible stage
1.03 14.4 (on plates) 15.9 3 rosette leaves are greater than 1 mm in length PO:0007106 LP.03 three leaves visible stage
1.04 16.5 4 rosette leaves are greater than 1mm in length PO:0007115 LP.04 four leaves visible stage
1.05 17.7 5 rosette leaves are greater than 1mm PO:0007065 LP.05 five leaves visible stage
1.06 18.4 6 rosette leaves are greater than 1mm PO:0007123 LP.06 six leaves visible stage
1.07 19.4 7 rosette leaves are greater than 1mm PO:0007063 LP.07 seven leaves visible stage
1.08 20 8 rosette leaves are greater than 1mm PO:0007095 LP.08 eight leaves visible stage
1.09 21.1 9 rosette leaves are greater than 1mm PO:0007101 LP.09 nine leaves visible stage
1.1 21.6 10 rosette leaves are greater than 1mm PO:0007103 LP.10 ten leaves visible stage
1.11 22.2 11 rosette leaves are greater than 1mm PO:0007116 LP.11 eleven leaves visible stage
1.12 23.3 12 rosette leaves are greater than 1mm PO:0007064 LP.12 twelve leaves visible stage
1.13 24.8 13 rosette leaves are greater than 1mm PO:0007083 LP.13 thirteen leaves visible stage
1.14 25.5 14 rosette leaves are greater than 1mm PO:0007085 LP.14 fourteen leaves visible stage
3 Rosette Growth PO:0007113 rosette growth stage
3.2 18.9 Rosette is 20% of final size PO:0007081 early rosette growth stage
3.5 24 Rosette is 50% final size PO:0007068 mid rosette growth stage
3.7 27.4 Rosette is 70% final size PO:0007076 late rosette growth stage
3.9 29.3 Rosette growth is complete PO:0007078 rosette growth complete stage
5 Inflorescence emergence PO:0007041 inflorescence emergence stage
5.1 26 First flower buds are visible in the rosette, plant has not yet bolted PO:0007006 IL.00 inflorescence just visible stage
6 Flower production PO:0007016 whole plant flowering stage
6 31.8 First flower is open, petals are at 90 degree angle to the pistil PO:0007026 FL.00 first flower(s) open stage
6.1 35.9 10% flowers to be produced are open PO:0007026 FL.00 first flower(s) open stage
6.3 40.1 30% flowers to be produced are open PO:0007034 FL.01 1/4 of flowers open stage
6.5 43.5 50 % flowers to be produced are open PO:0007053 FL.02 1/2 of flowers open stage
6.9 49.4 Flowering complete, flowers are no longer produced. PO:0007024 FL.04 end of flowering stage
8 Silique or fruit ripening. Seed pods become brown and then shatter. PO:0007010 whole plant fruit ripening stage
8 48 First silique or seed pod shatters. PO:0007036 beginning of whole plant fruit ripening stage
9 Whole Plant Senescence begins. Plant starts to lose, pigment becoming brownish. PO:0007017 sporophyte senescent stage
9.7 Senescense complete PO:0007017 sporophyte senescent stage